Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 125 2e-23 seq5 98.7 3e-15 seq17 96.9 1e-14 seq16 95.1 4e-14 seq7 93.3 1e-13 seq4 89.7 2e-12 >seq9 Length=12942059 Score = 125 bits (138), Expect = 2e-23 Identities = 279/410 (68%), Gaps = 13/410 (3%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAA--ATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996 ||| |||||||| || | || | ||||||||| || ||||| |||||||| ||| Sbjct 4443299 AAAGCCATCCAT--TTCTACAAGCAATTGATTAAGGGTACTTTCCCGCTCATCATTAGAA 4443356 Query 288997 CCTCTTGAATCACCCGAATCGCTCCtttttt-tACCAACAGCATCAATTTCGTCAATGAA 289055 || | | |||| ||| || | | | |||| |||||||| || |||||||| Sbjct 4443357 CC----GGAGAACCCACCACGCCCCCTAGCTCTCCCAATCGCATCAATCTCATCAATGAA 4443412 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 || | || |||| | |||||| || | ||| || | ||| || | ||||| ||| Sbjct 4443413 TATGATACTAGGAGCACATTGTCTTGCTTCTTGAAACAAGTTTCTCACCCTGGATGGTCC 4443472 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAAT-GTTACATTTG 289174 || ||||||| |||| || | || || ||| | |||| | || ||| | |||| | Sbjct 4443473 AACACCAACAAACATCTCCATGAAATCTGAACCAGATA-TAGATAGAAAAGGTACACCAG 4443531 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 ||| || || |||| | || ||||| ||||| || ||||| || || || | || | Sbjct 4443532 ATTCCCCAGCAGTTGCCTTTGCTAGAAGGGTCTTTCCAGTTCCTGGAGGACCGACCAAAA 4443591 Query 289235 GAACTCCCTTTGGTACTTTTGCCCC-AGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 || | || ||||| | || || || ||| || || |||| ||||||||| | || Sbjct 4443592 GAGCACCTTTTGGAATCTTCGCACCTAGCTC-CTCGTACTTCTTAGGGCTCTTGAGGAAG 4443650 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | |||| |||| | ||| | |||||||||||||| || || ||||| Sbjct 4443651 TGCACAAATTCCATGATTTCTTGCTTTGCCTCATCACAACCAGCAACATC 4443700 >seq5 Length=25802683 Score = 98.7 bits (108), Expect = 3e-15 Identities = 163/235 (69%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| |||||||| || || ||||| ||||| |||||||| || ||||| || | | Sbjct 20777761 TACCTTTCCTCTTCCCTCCTCCTTGATCAACATAGCGAGCAGTGTTGTTGAACACTCGAA 20777702 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| |||||||||||||| ||||| || || ||||| | || | | | Sbjct 20777701 GCATGGGAACTATACCATTGGAAGTACCATTTGTCCCCCGAATGTAACTGCCTGTGGCGT 20777642 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | | |||||||| | | ||||| || || | |||| ||| ||| || |||| Sbjct 20777641 GGATATTATGAACAGCAATACCAATTCCTCCAGCTAATTTGCTAATAACAGCACACTCCT 20777582 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 | | ||||| | || |||||||| ||||||| ||| | || ||| |||| Sbjct 20777581 TCAGAGTATCATATATGCCTTCAATGCTGTCATCTTTCATGCACAGGAGAAAGCA 20777527 Score = 84.2 bits (92), Expect = 6e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 301863 AACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTG 301922 |||||||||| ||||||||||||| || || | |||||||| ||||| ||||| ||| Sbjct 7868189 AACACCAGCATAGTGGAAAGTATTGAGGGTCATTTGAGTAGCAGGCTCTCCAATGGATTG 7868248 Query 301923 TGCCGCAATCATACCAACCATTTCTCCTGGTGCTACAATAGACT 301966 ||| |||| ||||| ||| || |||||||| || | |||| Sbjct 7868249 TGCAGCAACACAACCAATCATCTCACCTGGTGCGACTAATGACT 7868292 >seq17 Length=14661173 Score = 96.9 bits (106), Expect = 1e-14 Identities = 273/415 (66%), Gaps = 6/415 (1%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | | |||||| ||||| || ||||| ||||||||| | Sbjct 12166478 TAAAACCATCCATTTCAGTAAGTAATTGATTCAGTGTCTGCTCCCTCTCATCATTTCCTC 12166537 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | ||| || | || ||| | | | || |||||||| || || || || |||| Sbjct 12166538 CACC--AATT-CCTG--TCCCTC-TCTGCCTCCCGACAGCATCTATCTCATCGATAAAAA 12166591 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | || || || || | || | || || || || || | || || || | Sbjct 12166592 CTATGCATGGTGAGTTCGCCTTAGCCTTGTTGAACAAGTCCCTAACTCTTGAAGCCCCTA 12166651 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 ||||||| |||| || | ||| || || | || | || ||| | || ||||| Sbjct 12166652 CACCAACAAACATCTCAATAAACTCTGATCCTGACAGAGAAAAGAAAGGAACGCCTGCTT 12166711 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || |||| ||| | || || | || || || ||||| || ||||| |||| |||| Sbjct 12166712 CTCCAGCTATTGCTTTAGCTAGCAAGGTTTTTCCAGTTCCTGGAGGTCCTACTAACAGAA 12166771 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 ||||||| || | |||| || | | | | ||||| || | ||||||||||| | Sbjct 12166772 CTCCCTTAGGAATCCTTGCACCTACTGCAGCAAACTTCTCTGGAGTTTTTAAAAATTCCA 12166831 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||||||| | || || | ||||| || ||| ||| || |||||| |||| || Sbjct 12166832 CAATTTCTTGAAAATCTTGCTTTGCTTCGTCAACTCCAGCAACATCATCAAATGT 12166886 >seq16 Length=14134809 Score = 95.1 bits (104), Expect = 4e-14 Identities = 326/499 (65%), Gaps = 17/499 (3%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||||| ||||| | |||||| |||||| ||||| | ||||||||| | || Sbjct 8917693 ATCAAACCGACCAGGTCTCAGCAATGCTTTGTCTAAGATATCAGGTCTGTTTGTGCCAGC 8917634 Query 288912 CAATACAACAAT---AGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGA 288966 | ||||| | ||| ||| | |||||||||||| || || | ||| Sbjct 8917633 AAGCACAACTACTCCAGAGGTGGT---CCCAAATCCATCCAT--TTCCACAAGCAACTGA 8917579 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 ||||| || ||| | |||||||| |||| ||| || | | |||| | Sbjct 8917578 TTAAGAGTACTTTCGCGCTCATCATTGCCACCT---GAAAAGCCTCCACGACCCCTTGCT 8917522 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||| ||||| | ||| |||||||| || | | || | | |||||| || Sbjct 8917521 CGACCAATTGCATCTACTTCATCAATGAATATAATGCTAGGTGCACATTGTCTTGCCTCC 8917462 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| ||| || | ||||| |||| |||||| ||||||| | || ||||| Sbjct 8917461 TGGAATAAGCTTCTAACTCTGGATGGCCCAACTCCAACAAACATTTCCATGAAATCAGAC 8917402 Query 289147 GCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 |||| | | || | ||| | |||| | ||| || || |||| | || ||||| || Sbjct 8917401 CCGGACA-TGGATAAGAAAGGCACATCAGATTCACCAGCAGTTGCCTTTGCAAGAAGCGT 8917343 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAG 289264 || ||||| || ||||| || | | || | || || || | ||| || |||| | Sbjct 8917342 TTTCCCTGTGCCTGGTGGGCCTACAAGGAGGGCACCTTTCGGAATTTTAGCTCCCAACTC 8917283 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 || |||||||| || |||| | || | ||||| ||| || || | ||||||| Sbjct 8917282 -CTCATATTTCTTTGGATTCTTGAGGAAGTGTACAAACTCCATAATCTCTTGCTTTGCCT 8917224 Query 289325 CATCACATCCTGCTACATC 289343 ||||||| || |||||||| Sbjct 8917223 CATCACAGCCAGCTACATC 8917205 >seq7 Length=15101417 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||| || || ||||| ||||| || ||||| | |||||| || | | Sbjct 5425432 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCA 5425491 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||| |||| ||| ||||| || || ||||| ||||| ||||||| |||| | | Sbjct 5425492 ACATTGGAACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCAC 5425551 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | | || |||| | || ||||| || || | ||||| || ||| || |||| Sbjct 5425552 GGATGTTGTGAACAGATACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCT 5425611 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | |||| | || ||||||||| |||||||| ||| Sbjct 5425612 TCAATGTATCATATATTCCTTCAATACTATCATCTTTCAT 5425651 >seq4 Length=23188140 Score = 89.7 bits (98), Expect = 2e-12 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| |||||||| || || || ||| |||| |||||| | || |||| | | Sbjct 3090035 ACAGACATGGACTCTATATGCGTCACTCTGGTCAAATAGCCTCTCTTTCAAGAAGTGTGC 3090094 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| |||| ||||| ||||| || ||||| ||||| || || ||||||||||| || Sbjct 3090095 GGCACCATGTGCTATCATGCAATCTCGTTCCATCTCACCAAAGCGGAGACCACCATCACG 3090154 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | ||| || || |||||||| | ||||| | || ||| || | ||| ||| Sbjct 3090155 TGACCTTCCTTCAGCAGGCTGCCTTGTGAGGATCTGCACAGGGCCTCTTCCACGGGAATG 3090214 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| |||| |||||||| || || | || || | | |||||| | ||| || Sbjct 3090215 GATCTTGTCATCAACCATATGTTTTAGCCTTTGATAATAAGTGGGACCAAGGAAAAT 3090271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471770191835218