Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq2514 618 5e-172 seq13 125 8e-24 seq3 86.0 7e-12 seq4 84.2 2e-11 seq1667 82.4 8e-11 seq15 82.4 8e-11 >seq2514 Length=157033 Score = 618 bits (684), Expect = 5e-172 Identities = 718/963 (75%), Gaps = 4/963 (0%) Strand=Plus/Minus Query 157607 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 157666 ||||| || ||| | || ||||| || || |||||||||| ||| | ||| | ||||| Sbjct 1304 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACT 1245 Query 157667 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 157725 ||||| || || |||| ||| | ||||| || || || ||||| || || || ||||| Sbjct 1244 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGA 1186 Query 157726 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATC 157785 ||| || |||| || || | ||||| ||||| ||||| |||||||| || | || | Sbjct 1185 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTAC 1126 Query 157786 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 157845 ||| || || || | ||||| || || || |||||||| ||||| ||||||| || Sbjct 1125 TTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1066 Query 157846 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGC 157905 | | || ||||| ||||||| | || | || | |||||| | ||||| | | Sbjct 1065 GTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1006 Query 157906 ATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGT 157965 |||||||| ||||||||||||||| | |||| | |||||||| || ||||| ||| Sbjct 1005 TTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 946 Query 157966 AGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 158025 |||||||| ||||| || || || || ||||||| ||| | | ||||| ||||||| Sbjct 945 TGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCA 886 Query 158026 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 158085 ||| ||| || |||| |||||||| || ||||||||||||||||||| ||| |||| Sbjct 885 AGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGT 826 Query 158086 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGT 158145 |||||| || || |||||||||||||||||||| || || ||| | || || ||||| || Sbjct 825 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 766 Query 158146 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC- 158204 |||||| || || || ||| ||||||||| || | | || || | || | | || Sbjct 765 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCA 707 Query 158205 GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGA 158264 | ||||| || |||| || || || | ||||||| || |||||||||||||| | Sbjct 706 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAA 647 Query 158265 CCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCAT 158324 | ||||| ||||| || || ||||| || || || || |||||||||||||| ||| | Sbjct 646 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 587 Query 158325 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGT 158384 | |||||||| ||||| || || |||||| | ||||| |||||||| || || ||||||| Sbjct 586 TTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGT 527 Query 158385 TCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 158444 |||| || | || | ||| ||||| ||||| || || |||||||| |||||||| | Sbjct 526 TCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAAT 467 Query 158445 CCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTG 158504 | | ||||| |||| |||||||| | || |||||||| ||| | | ||||| ||| Sbjct 466 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 407 Query 158505 GTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTG 158564 ||||||||||||||||||||||| ||||| || || || ||||| || ||||| |||| Sbjct 406 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTG 347 Query 158565 CTG 158567 ||| Sbjct 346 CTG 344 Score = 529 bits (586), Expect = 2e-145 Identities = 723/1007 (72%), Gaps = 2/1007 (0%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | || || || ||||||||||| ||||| || ||| | || || Sbjct 32832 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGTCTATTGCTCTTT 32891 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||| ||| | ||| | || |||||| | || || ||| | ||||| || ||| Sbjct 32892 CCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGG 32951 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || ||||| || | || ||||||||| | || ||| ||||| | || || || || Sbjct 32952 TATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTAACCGCCGCAGTT 33011 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 || || |||||| | | | | |||||| | | |||| ||||||||||| | || Sbjct 33012 TCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGTCCTGAAGCACAA 33071 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 || |||| || ||||| ||| | || || || |||| |||||| || |||||||| Sbjct 33072 GGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTTGCTCTCCACGGA 33131 Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTATC 159665 || |||| ||||| ||||| ||| | ||||| |||||||| || || || || || Sbjct 33132 GCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA-TCCGTGCAATT 33190 Query 159666 -CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 159724 || ||||| ||||| || || ||||||||||| ||||| |||||||| || ||||| Sbjct 33191 ACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGTTTCTGTATTCCT 33250 Query 159725 CATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 159784 || || ||| | |||||||| ||||||| || || || ||||| || ||||| || Sbjct 33251 GATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCTAT 33310 Query 159785 CTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATAT 159844 ||| ||||| | | || | ||||||||||| || ||||| | || || || ||||| Sbjct 33311 ATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACCCATTTCATAT 33370 Query 159845 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGT 159904 |||||||||||| ||| || | || | || || || | || || ||||| | |||||| Sbjct 33371 GATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGT 33430 Query 159905 AGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAAC 159964 ||| || || | | ||||||||| || |||||||| || || ||| | |||| Sbjct 33431 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 33490 Query 159965 TCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024 ||||| || || ||||| || |||||||| || |||||||| ||||| || || || || Sbjct 33491 TCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTGGTCCCAAATTTTTGG 33550 Query 160025 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGG 160084 |||| ||||| || || || ||| | |||||||| ||||| ||||| || || | || Sbjct 33551 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 33610 Query 160085 TCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTT 160144 | | |||| || |||| | |||| || ||||| || || ||||| || || || Sbjct 33611 TTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACGTGCCTATGACTT 33670 Query 160145 CGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 160204 ||| ||| || ||| | ||||| |||||||| ||||||||||| ||||| |||||||| Sbjct 33671 CGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAA 33730 Query 160205 CATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAA 160264 || || || || ||||| | ||||| ||| |||| || ||||| || |||||||| Sbjct 33731 TATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 33790 Query 160265 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 | |||| ||||| || || || | || | || ||||| ||||||| Sbjct 33791 CCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 33837 >seq13 Length=15658869 Score = 125 bits (138), Expect = 8e-24 Identities = 244/358 (68%), Gaps = 2/358 (1%) Strand=Plus/Plus Query 158032 TTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCA 158091 ||| || |||| ||||||| || || | |||||||||||||| ||| |||||||| | Sbjct 4833147 TTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTTAACTTTATGATTGTATTCTA 4833206 Query 158092 AGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGG 158151 ||| || || |||||||||| |||| || || ||| | || || | || ||| | Sbjct 4833207 AGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTAGGCGTAACAGGTTTATGCAA 4833266 Query 158152 TGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTG-AAA 158210 || || | | | || |||||| || | | || || || | | | | || | ||| Sbjct 4833267 TGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACCTC-TAATTTGATCAAGGAAA 4833325 Query 158211 CGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATA 158270 | | ||| || || || | ||||||| || |||||| ||||||| || ||| Sbjct 4833326 CCAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGGTCAAAAGGAAGAAACTTATG 4833385 Query 158271 ACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACA 158330 ||||||| | || ||||| | || || | ||||||| |||| ||| || |||| Sbjct 4833386 ACATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTTCTAATATGCTAGTTTTAACA 4833445 Query 158331 ACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCAC 158388 ||| | ||| || || |||||| | | | | |||||| | | || ||||||||||| Sbjct 4833446 GCTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATCTGGTTCAC 4833503 >seq3 Length=20216275 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 158792 TACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTT 158851 ||||| || | ||||| ||||||||||||||||| || || |||| || ||||| Sbjct 955890 TACTCATGCAGGGCTGGAGCTTGCTCTTCATGTGCTGGCAAGGTTGTGCAAGGGACTGTG 955831 Query 158852 GATCAGAGTGATCAGTCG-TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTAC 158910 |||||| |||| || | ||| | || || || ||||| || | ||| | ||||| || Sbjct 955830 GATCAGTCTGAT-GGTAGCTTCCTTGATGAAGACCAGATAGCGGAAGGTTGGGTTCTCAC 955772 Query 158911 GTGTGTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGA 158961 ||||| || ||||| || |||||| ||| ||| || | ||||||| Sbjct 955771 TTGTGTTGCTTATCCTACGTCTGATGTTGTCATTGAGACACACAAAGAGGA 955721 >seq4 Length=23188140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 158749 ATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGG 158808 |||||| ||||| ||||| || | ||||||||||| | ||| ||||| | ||||| Sbjct 20462752 ATACATCCTAGATGCAGCCGAGAATGCAGGAGTTGAGCTGCCTTATTCTTGCAGGGCTGG 20462693 Query 158809 TGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTC 158868 ||||| | | | ||||| || || | | ||| || |||| || ||| |||| || Sbjct 20462692 GGCTTGTTGTACCTGTGCTGGGAAGGTGGCATCAGGTTCTGTCGACCAGTCTGATGGTTC 20462633 Query 158869 GTTCTTAGACGATGATCAGATTGCAGCA-GGATTTGTTCTTACGTGTGTAGCATATCCAA 158927 ||| | ||||| ||||| | || || | || | | |||| || || || | || |||| Sbjct 20462632 TTTCCTTGACGAGGATCA-AATGAAGGACGGTTATCTTCTGACTTGCGTTTCCTACCCAA 20462574 Query 158928 CATCTGATTGTGT 158940 | || |||||||| Sbjct 20462573 CTTCAGATTGTGT 20462561 >seq1667 Length=4831 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 159306 GATGACTGGCTTA--AACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTC 159363 ||||||||| ||| || | || || |||||||||||||| |||||||| ||| | || Sbjct 2917 GATGACTGG-TTACGAAAG-GACCGTTTTGTTTTTGTGGGTTGGTCTGGTCTATTGCTCT 2974 Query 159364 TTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTT 159423 |||| ||| ||| | ||| | || |||||| | || | | | | ||||| || | Sbjct 2975 TTCCTTATGCCTATTTTGCCTTAGGGGGTTGGTTCACAGTTATAACCTTTGTAACCTCAT 3034 Query 159424 GGTACACCCACGGTCTTGCTAGTTCCTATCTTG--AGGGTGCTAACTTTCTCACAGCAGC 159481 |||| ||||| || | || ||||||||| ||| ||| ||| ||||| | || || | Sbjct 3035 GGTATACCCATGGATTGGCCAGTTCCTAT-TTGAAAGGTTGC-AACTTCTTAACCGCTGT 3092 Query 159482 TGTCTCGACGCCTGCT 159497 || || || |||||| Sbjct 3093 AGTTTCTACTCCTGCT 3108 >seq15 Length=15134944 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 160172 AGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGC 160231 |||||| ||||||||||| |||| |||||||| || || || || || | | ||| | Sbjct 11738122 AGATCCTGAATTTGAGACTTTCTGTACCAAAAATATTCTTTTAAATAAAAGCATTCGTAC 11738063 Query 160232 ATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCC 160291 ||| |||| || ||||| || ||||||||| |||| ||||| || | || | || Sbjct 11738062 TTGGATGGCGACTTAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGAAGGTTCTACC 11738003 Query 160292 TAGAGGCAACGCCCTTTAATAAA 160314 | || ||||| ||||||| || Sbjct 11738002 CCGTGGAAACGCTCTTTAATGAA 11737980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548357167334480