Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq2514 637 5e-178 seq13 114 1e-20 seq1667 109 6e-19 seq15 96.9 4e-15 seq4 93.3 5e-14 >seq2514 Length=157033 Score = 637 bits (706), Expect = 5e-178 Identities = 737/990 (74%), Gaps = 2/990 (0%) Strand=Plus/Minus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| ||| | ||| | ||| ||| | |||||||| ||| | || ||||| ||||| | Sbjct 1332 CTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTT 1273 Query 150898 GATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCC 150957 ||||||||| ||| | ||| | ||||| | || || | || ||||| ||||| || Sbjct 1272 GATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCC 1213 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 || || ||||| ||||| || |||||||| ||| |||| ||||| | || || ||||| Sbjct 1212 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1153 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 ||||| |||||||| || ||||| ||||| ||||| || ||||||| || || || Sbjct 1152 TATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAAT 1093 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137 |||||||| || || | ||||||||| | |||||||| ||||||| | || |||| Sbjct 1092 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 1033 Query 151138 CTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCG 151197 | |||||| | ||||| | | ||||||||| |||||||||||||| || ||| Sbjct 1032 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCG 973 Query 151198 CTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTG 151256 ||||||||||||| ||||| ||| |||||||| || ||||| ||||| || || | || Sbjct 972 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTG 914 Query 151257 CAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTA 151316 | || ||| | | ||||| |||||||||| ||| || |||| ||||| || || | Sbjct 913 CTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAA 854 Query 151317 TTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACC 151376 | ||||| || || |||| ||| |||| ||||| || ||||||||||| || ||||||| Sbjct 853 TCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 794 Query 151377 CCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACG 151436 | || || ||| | || || |||||||| ||||| || || || ||| || ||||| | Sbjct 793 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 734 Query 151437 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATG 151496 ||||| |||| || ||| || | | || ||||| ||||| || || || | | Sbjct 733 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 674 Query 151497 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTG 151556 |||||| || |||||||| ||||| || || || ||||| ||||| || ||||| |||| Sbjct 673 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 614 Query 151557 GTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCG 151616 | || | ||||||||||| ||| || ||||| || ||||| | || |||||| | | Sbjct 613 GCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAG 554 Query 151617 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCA 151676 | || |||||||| || ||||||||||||||||| | ||| | ||||| ||||| |||| Sbjct 553 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 494 Query 151677 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 151736 | || || |||||||| |||||||| || | | ||| |||| || || | || | Sbjct 493 ATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 434 Query 151737 CCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 151796 ||||||| || || | |||||||| || ||||||||||||||||| || ||||||| Sbjct 433 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 374 Query 151797 CTCACAACTTCCCTCTCGACCTTGCTGCTG 151826 |||| || |||||||| ||||| ||||||| Sbjct 373 CTCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 625 bits (692), Expect = 3e-174 Identities = 749/1017 (74%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||||||| | ||| ||||||||||||||||| |||||||| || Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || | || ||||| ||| ||| |||| | || |||||| | || || || || || Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 152538 | || |||||||| || || ||||| ||||||||| |||| || ||||| | Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTA 32999 Query 152539 ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 152598 || || |||||||||||||| || || | | | |||||| | | | || |||||| Sbjct 33000 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGT 33059 Query 152599 CCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTG 152658 ||||| || ||||| ||||| | ||| ||| | || || | ||| ||||||| Sbjct 33060 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTT 33119 Query 152659 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACGT 152718 || |||||||| ||||||| ||||| ||||| ||| | || || |||||||| || || Sbjct 33120 GCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG- 33178 Query 152719 CTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTT 152774 ||| || | || || || ||||| || || ||||||||||| || || ||||| Sbjct 33179 ---ATCCGTGCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTT 33235 Query 152775 TGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTT 152834 |||| || || || || || || || ||||| || ||||||| || || || ||| Sbjct 33236 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 33295 Query 152835 CGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATT 152894 || || ||||| || || |||||| | ||||| | |||||||| || || |||||| | Sbjct 33296 TGGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACT 33355 Query 152895 GAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCAT 152954 ||| || |||||||||||||| ||||| ||| | ||||| | || |||| | || || Sbjct 33356 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTAT 33415 Query 152955 TCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAA 153014 |||||||| ||| ||||| |||||||| | | |||||||||| ||||| || ||| Sbjct 33416 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 33475 Query 153015 AGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTG 153074 ||||| || ||||||| ||||| || ||||| ||||| || || ||||| || || Sbjct 33476 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTG 33535 Query 153075 GTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTT 153134 |||||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | || Sbjct 33536 GTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 33595 Query 153135 TGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCT 153194 |||||| || | ||| | |||| | || ||||| | ||||||| ||||| || || Sbjct 33596 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCT 33655 Query 153195 TCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGAC 153254 ||||| || || || || ||||| |||||| | || | |||||||||||||||||||| Sbjct 33656 ACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 33715 Query 153255 GTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGA 153314 |||||||| || ||||| ||||| || ||||| ||||||||||| |||| || || Sbjct 33716 TTTCTATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGA 33775 Query 153315 CCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 || |||||||| ||| | | |||||||| ||||| | || || || |||||||| Sbjct 33776 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 33832 >seq13 Length=15658869 Score = 114 bits (126), Expect = 1e-20 Identities = 269/405 (66%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 151291 TTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCA 151350 ||| || |||| |||| || || || | ||| || || |||| ||| |||| ||| | Sbjct 4833147 TTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTTAACTTTATGATTGTATTCTA 4833206 Query 151351 AGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGG 151410 ||| ||||| |||| || || |||| || || ||| | || || | ||| | | | Sbjct 4833207 AGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTAGGCGTAACAGGTTTATGCAA 4833266 Query 151411 TGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGAC 151470 || || | | | | ||||| |||| | |||| || ||| || | || || Sbjct 4833267 TGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACCTCTAATTTGATCAAGGAAAC 4833326 Query 151471 CACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAA 151530 || |||| || ||| || | ||||||| || |||||| | ||||| || || | Sbjct 4833327 CAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGGTCAAAAGGAAGAAACTTATGA 4833386 Query 151531 CATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAA 151590 |||||| | || || |||| ||||| | | |||||| |||| ||| || |||| Sbjct 4833387 CATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTTCTAATATGCTAGTTTTAACAG 4833446 Query 151591 TTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGC 151650 || | ||| | || |||||| | | | |||||| | | ||||||||||||||| | Sbjct 4833447 CTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATCTGGTTCACTAC 4833506 Query 151651 ACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTT 151695 ||||| | ||||| ||| | |||| || || |||| |||| Sbjct 4833507 TTTTGGTATTAGCACTATGCCTCTCAATCTAAA--TTTTCTACTT 4833549 >seq1667 Length=4831 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGA-GACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | ||||||||||| ||| || | |||||||| |||||||| ||||||||||| Sbjct 2905 TTTGATATTATGGATGACTGG-TTACGAAAGGACCGTTTTGTTTTTGTGGGTTGGTCTGG 2963 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 152477 || | || ||||| ||| ||| |||| | || |||||| | || | | || || Sbjct 2964 TCTATTGCTCTTTCCTTATGCCTATTTTGCCTTAGGGGGTTGGTTCACAGTTATAACCTT 3023 Query 152478 CGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCT 152537 | || |||||||| || || ||||| ||||||||| || | || ||||| | Sbjct 3024 TGTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGAAAGGTTGCAACTTCTT 3083 Query 152538 TACTGCGGCAGTTTCTACTCCAGC 152561 || || | |||||||||||| || Sbjct 3084 AACCGCTGTAGTTTCTACTCCTGC 3107 >seq15 Length=15134944 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 153237 AGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGC 153296 |||||||||||||||||| |||| ||| || ||||| ||||| || || | ||||| | Sbjct 11738122 AGATCCTGAATTTGAGACTTTCTGTACCAAAAATATTCTTTTAAATAAAAGCATTCGTAC 11738063 Query 153297 TTGGTTGGCACCTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCC 153356 |||| |||| || || || |||||||| ||| | | |||||||| |||| | || Sbjct 11738062 TTGGATGGCGACTTAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGAAGGTTCTACC 11738003 Query 153357 ACGAGGCAACGCTCTGTGATATACTT 153382 || || |||||||| | || |||| Sbjct 11738002 CCGTGGAAACGCTCTTTAATGAACTT 11737977 >seq4 Length=23188140 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/201 (71%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 151995 GATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAG---TTGATATGAACTACTCT 152051 |||||| |||||| | || ||||||||| || || |||| | |||||| Sbjct 21677409 GATGACATCTACATCCTTGACCATGCTGAGGAGGCAGAAGAGATTGACCTCCCCTACTCA 21677468 Query 152052 TGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAG 152111 || | ||||| |||| || || ||| ||| |||||||||| || || || |||||| Sbjct 21677469 TGCAGGGCTGGCTCATGCTCTTCATGTCTTGGCAAGATTGTGAAGGGGACTGTGGATCAG 21677528 Query 152112 AGTGAC-CAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGT 152170 ||| | | | | |||| ||||||||||||| || ||| | || || |||||||| Sbjct 21677529 TCTGATGCTAGCTTCCTTG-ATGATGACCAGATAGAGGAAGGCTGGGTTCTCACCTGTGT 21677587 Query 152171 TGCATATCCAACTTCTGATGT 152191 ||| ||||| || |||||||| Sbjct 21677588 TGCTTATCCTACGTCTGATGT 21677608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549605128116080