Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq17 158 1e-32 seq1 136 5e-26 >seq17 Length=14661173 Score = 158 bits (174), Expect = 1e-32 Identities = 226/313 (72%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| ||||| || ||||||||||| |||||||| || | | |||| | |||||| Sbjct 8256384 GAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGG 8256325 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||| || ||||| || || ||| || || || || ||||||||| Sbjct 8256324 ACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAG 8256265 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || ||||| || ||| ||||| ||||||| | || |||||||| | Sbjct 8256264 AAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCGG 8256205 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | || | ||| || |||||||| || ||||| | |||||||| || || |||||| Sbjct 8256204 ATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTAC 8256145 Query 869873 ATCTCCCATACTTGCT-GGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGC 869930 |||||||| | ||| | |||| | || ||||| | ||| || |||| ||||| || Sbjct 8256144 ATCTCCCAGA-TTGATGGGTACTGAATGGGGAACA-TACAGAACCGGTCTGGGTTTTCAG 8256087 Query 869931 GCAACAGGGGTTC 869943 || |||||||| Sbjct 8256086 CCAGAAGGGGTTC 8256074 Score = 86.0 bits (94), Expect = 8e-11 Identities = 180/266 (68%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 869186 TCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 869245 |||||| ||||| ||||| ||||| | || ||||| | || ||||| || | | Sbjct 8256655 TCGCGA--GATCAACTCGTTTGAAAAGGTTAACCCCGGCATCAACCCACGCTTTTTTAAC 8256598 Query 869246 CAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATG 869305 ||||| || || || ||||| ||||||||||| || || || ||| ||||| | | Sbjct 8256597 CAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAAGCAAAAGCAACT 8256538 Query 869306 AGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCC 869365 |||| ||| || || | ||| |||| || |||||| || ||||| ||| Sbjct 8256537 AGCCTCTCCGCGAAACTCTCG-----CTCC-CGTCAATCCACCGCAAGGCCCACCGTGCC 8256484 Query 869366 TTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGG 869425 || || ||| |||||||||| ||||| || |||| || | | ||| || | | Sbjct 8256483 TTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAACAGACGATTCTTCTCCTCAGAA 8256424 Query 869426 TCCTTGACATAGGTGTCGATCAGGAG 869451 ||||||| ||| || || | ||| || Sbjct 8256423 TCCTTGATATAAGTCTCCAACAGAAG 8256398 >seq1 Length=48367220 Score = 136 bits (150), Expect = 5e-26 Identities = 212/298 (71%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| ||||| || ||||||||||| ||||| || || | | |||| | |||||| Sbjct 31903449 GAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGG 31903508 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||| || ||||| | |||||| ||||| || || ||||||||| Sbjct 31903509 ACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCGGCGAAG 31903568 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| || ||||| |||||| | || ||||||| || Sbjct 31903569 AAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACCG 31903628 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 || | ||| || ||||| || || ||||| | ||||| || || || |||||| Sbjct 31903629 ACATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCAGCTTTCTTGTAC 31903688 Query 869873 ATCTCCCATACTTGCTGG-TAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTC 869928 |||||||| | ||| ||| || | || ||||| | ||| ||||||| ||||| || Sbjct 31903689 ATCTCCCAGA-TTGATGGATATTGAATTGGGAACA-TACAGAAGCGGTCTGGGTTTTC 31903744 Score = 114 bits (126), Expect = 2e-19 Identities = 181/257 (70%), Gaps = 8/257 (3%) Strand=Plus/Plus Query 869186 TCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 869245 |||||| ||||| ||||| |||| ||||| ||||| || || || || || | | Sbjct 31903178 TCGCGA--GATCAACTCGTTCGAGAAGGTCAGGCCTGGCATTAGCCCACGTTTTTTTAAC 31903235 Query 869246 CAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATG 869305 ||||| || || || ||||| ||||||||||| || || || ||| ||||| | || Sbjct 31903236 CAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAAGCAAAAGCAATT 31903295 Query 869306 AGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCC 869365 | || ||| ||||| | ||| ||||| || ||||||| | ||||| || ||| Sbjct 31903296 AACCTCTCCGCAAAACTCTCG----CCTCC--GTCGATCCACCGTAAAGCCCACTCCGCC 31903349 Query 869366 TTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGG 869425 || || ||| |||||||||| || ||||| |||| ||| ||| ||| || | | Sbjct 31903350 TTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGGCGGTTCTTCTCAGTAGAA 31903409 Query 869426 TCCTTGACATAGGTGTC 869442 ||||||| ||||| || Sbjct 31903410 TCCTTGATGTAGGTCTC 31903426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106932889386938