Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 150 3e-30 seq17 138 2e-26 >seq1 Length=48367220 Score = 150 bits (166), Expect = 3e-30 Identities = 228/321 (71%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| ||||| ||| ||||| ||||| || || || || || | | Sbjct 31903178 TCGCGA--GATCAACTCGTTCGAGAAGGTCAGGCCTGGCATTAGCCCACGTTTTTTTAAC 31903235 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 ||||| || ||||| ||||| ||||||||||| || || || ||| ||||| | | Sbjct 31903236 CAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAAGCAAAAGCAATT 31903295 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 | || ||| |||||| | || |||| || ||||||| | |||||||| ||| Sbjct 31903296 AACCTCTCCGCAAAACTCTCG----CCTCC--GTCGATCCACCGTAAAGCCCACTCCGCC 31903349 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 || || ||| | |||||||| || ||||| |||| ||| ||| |||||| | Sbjct 31903350 TTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGGCGGTTCTTCTCAGTAGAA 31903409 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| |||||| || | | || ||| ||||||||||||| || || || ||| Sbjct 31903410 TCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCTGAGTGGATATTCTCAATCGCG 31903469 Query 794647 ATCTGGAAGCCATA-AAAGCA 794666 |||||||| || || |||||| Sbjct 31903470 ATCTGGAACCCGTAGAAAGCA 31903490 >seq17 Length=14661173 Score = 138 bits (152), Expect = 2e-26 Identities = 222/317 (70%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| ||||| |||| | || ||||| | || ||||| || | | Sbjct 8256655 TCGCGA--GATCAACTCGTTTGAAAAGGTTAACCCCGGCATCAACCCACGCTTTTTTAAC 8256598 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 ||||| || ||||| ||||| ||||||||||| || || || ||| ||||| | || Sbjct 8256597 CAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAAGCAAAAGCAACT 8256538 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 |||| ||| || ||| | || || | | || |||||| || |||||| |||| Sbjct 8256537 AGCCTCTCCGCGAAACTCTC---GCTCCC---GTCAATCCACCGCAAGGCCCACCGTGCC 8256484 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 || || ||| | |||||||| ||||| || |||| || | | |||||| | | Sbjct 8256483 TTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAACAGACGATTCTTCTCCTCAGAA 8256424 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| || || || | || || ||| ||||||||||||| || || || ||| Sbjct 8256423 TCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCTGAGTGGATATTCTCAATCGCG 8256364 Query 794647 ATCTGGAAGCCATAAAA 794663 |||||||| || ||||| Sbjct 8256363 ATCTGGAATCCGTAAAA 8256347 Score = 129 bits (142), Expect = 9e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||||||||||| |||||||| || ||||| || || || || || || Sbjct 8256339 GCCTCCGAGACTTGGACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCA 8256280 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| ||||| ||||| || ||| ||||| ||||||| | || Sbjct 8256279 TCAGAGGCGGCGAAGAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGG 8256220 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||||| | || | ||| ||||||||||| || ||||||||||||||| Sbjct 8256219 TTTTCCCAGTGGCGGATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCC 8256160 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || || || |||||||||||||| || | |||| | |||||||||| Sbjct 8256159 TCAGCTTTCTTGTACATCTCCCAGATTGATGGGTACTGAATGGGGAACA 8256111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915978974353646