Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 8e-16 seq15 96.9 3e-15 seq7 93.3 3e-14 seq1 89.7 4e-13 seq11 87.8 1e-12 seq17 86.0 5e-12 seq12 84.2 2e-11 >seq6 Length=26894541 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || |||||||| |||| ||||||||||| || | ||| ||| | | Sbjct 10380422 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTCC 10380481 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | ||||| |||||| || |||||||| | || |||||| Sbjct 10380482 GATACTATTGACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAA 10380541 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| ||| || ||||| | ||||| | | || | ||||| || || Sbjct 10380542 CAGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTATAAT 10380601 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 10380602 ATCCAAAAGGAGTCCAC 10380618 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | ||||| || ||||| || | ||| ||| ||| Sbjct 10380878 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAGACCATCACTCTTGAAGTTGAGAGCTCT 10380937 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || ||| |||||| ||||| ||||| | || ||| || Sbjct 10380938 -GATACGATAGACAACGTGAAAGCCAAGATTCAGGATAAGGAAGGTATTCCACCGGACCA 10380996 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || || | ||||| | | || | ||||| ||||| Sbjct 10380997 GCAGAGGCTTATATTTGCTGGGAAGCAATTAGAGGATGGGAGGACTCTTGCGGATTACAA 10381056 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||||| ||||||||||| Sbjct 10381057 TATTCAGAAGGAGTCTAC 10381074 >seq15 Length=15134944 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| || || ||||| || || ||| |||| ||| | Sbjct 12612482 AAGATGCAGATCTTCGTGAAAACCTTGACGGGCAAGACAATAACCCTCGAGGTTGAGTCC 12612423 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || ||||| | | | || ||| |||||| || || ||||| | || |||| Sbjct 12612422 TCAGACACTGTTGACAATGTCAAAGCCAAGATTCAAGACAAGGAAGGTATCCCACCGGAT 12612363 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || ||| | || |||| || || |||||||| ||||||| | ||| | || |||||| Sbjct 12612362 CAACAGCGTCTCATTTTCGCTGGAAAACAGCTCGAGGACGGCCGTACACTTGCTGACTAC 12612303 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||||| || |||||||| || | ||| ||||| | | ||| | || ||| Sbjct 12612302 AACATCCAGAAGGAGTCCACTCTCCACTTGGTGCTTCGCTTGAGGGGTGGA 12612252 >seq7 Length=15101417 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || || ||||| || || || ||||||||| | || ||| ||| Sbjct 1458664 ATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACCATTACCTTGGAGGTAGAGAGCTCT 1458605 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || ||| || || ||||| ||| | ||| ||||| Sbjct 1458604 -GACACCATCGATAATGTCAAGGCAAAAATCCAGGACAAAGAGGGCATCCCCCCAGATCA 1458546 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||| | ||| || || ||||| ||||| | || |||| |||||||| Sbjct 1458545 ACAGAGGCTTATCTTTGCTGGCAAGCAGCTAGAGGATGGGCGCACTCTGGCTGACTACAA 1458486 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || ||||||||||| | ||| ||||| || | ||||| || || Sbjct 1458485 CATCCAGAAGGAGTCTACTCTTCACTTGGTGCTGCGCTTGCGTGGAGG 1458438 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||| |||||| | || ||||| ||||| ||| | || ||| ||| | Sbjct 1459120 ATGCAAATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCG 1459061 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || ||| ||||| ||||| ||||| | ||| ||||| Sbjct 1459060 -GATACTATTGATAATGTGAAAGCCAAGATCCAGGATAAGGAAGGGATCCCCCCAGATCA 1459002 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || |||||||| ||||| | ||| | || || || || Sbjct 1459001 GCAGAGGTTGATCTTTGCTGGCAAACAGCTTGAGGATGGACGAACCCTTGCTGATTATAA 1458942 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| |||||||| || || | ||| |||| | | ||| |||| || Sbjct 1458941 CATCCAAAAGGAATCCACTCTCCACTTGGTTCTACGTTTGAGAGGTGG 1458894 >seq1 Length=48367220 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || ||||| ||| | || ||||| ||||| ||| | || ||| ||| Sbjct 44859905 ATGCAAATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCT 44859964 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | ||||| ||||| || || || || | || || || Sbjct 44859965 -GACACTATTGATAATGTAAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCAGACCA 44860023 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| ||| || || ||||| ||||| | | || | || |||||||| Sbjct 44860024 GCAGAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTTGCCGACTACAA 44860083 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| ||||||||||| | || ||||| | ||||| |||| || Sbjct 44860084 CATTCAGAAGGAGTCTACCCTTCATTTGGTGCTCCGATTGAGAGGTGG 44860131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || | ||||| || ||||| ||| | || |||| ||| Sbjct 44860589 ATGCAGATCTTTGTGAAGACCCTCACAGGAAAGACCATCACCTTGGAGGTGGAGAGCTCT 44860648 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || ||| ||||| || || |||||| | ||| || || Sbjct 44860649 -GATACCATTGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 44860707 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || || ||||| || || | | || | || |||||||| Sbjct 44860708 GCAGAGGTTGATTTTTGCTGGGAAGCAGCTTGAAGATGGGAGGACTCTTGCTGACTACAA 44860767 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||| |||||||| || | ||| ||||| || | | || || |||| Sbjct 44860768 CATTCAGAAGGAGTCAACCCTTCACTTGGTGCTGCGTCTCCGTGGAGGAA 44860817 >seq11 Length=18885544 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || || |||||||| || || ||||||||| | || |||| ||| Sbjct 16430240 ATGCAGATTTTCGTGAAGACTTTAACTGGGAAGACCATTACCTTGGAGGTGGAGAGCTCT 16430299 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| ||| | || || || ||| || || || || | || ||| || Sbjct 16430300 -GACACTATCGATAATGTGAAGGCCAAAATTCAGGACAAGGAGGGGATCCCACCGGACCA 16430358 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || |||||||| || || | | ||| | || |||||||| Sbjct 16430359 GCAGAGGTTGATTTTTGCTGGAAAACAGCTTGAAGATGGAAGGACACTTGCTGACTACAA 16430418 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| || |||||||| || | ||| ||||| | | |||| || |||| Sbjct 16430419 CATCCAGAAGGAGTCAACCCTTCACTTGGTGCTTCGGCTGCGTGGAGGAA 16430468 >seq17 Length=14661173 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| |||||| | || ||||| ||||| ||| |||| ||| ||| Sbjct 4943505 ATGCAGATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 4943446 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | |||||| ||||| || || ||||| | ||| ||||| Sbjct 4943445 -GACACAATCGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCCCCAGATCA 4943387 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | || | ||| || || || || ||||| | ||| | || |||||||| Sbjct 4943386 GCAAAGGTTGATCTTTGCTGGGAAGCAACTAGAGGATGGACGCACACTCGCTGACTACAA 4943327 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| ||||| Sbjct 4943326 CATCCAGAAGGAGTCCACCCTCCACTTGGTG 4943296 >seq12 Length=14929429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| || || ||||| || || ||| |||| || | Sbjct 11925966 AAGATGCAGATCTTCGTGAAAACCTTGACGGGCAAGACAATAACCCTCGAGGTAGAATCC 11925907 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| ||| | | || ||| |||||| || || ||||| | || || Sbjct 11925906 TCAGATACAATCGACAATGTCAAAGCCAAGATTCAAGACAAGGAAGGTATCCCACCAGAC 11925847 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || ||| | || |||| || || |||||||| ||||||| | ||| | || |||||| Sbjct 11925846 CAACAGCGTCTCATTTTCGCTGGAAAACAGCTCGAGGACGGCCGCACACTCGCTGACTAC 11925787 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||||| || |||||||| || | ||| ||||| | | ||| | || ||| Sbjct 11925786 AACATCCAGAAGGAGTCCACTCTCCACTTGGTGCTTCGCTTGAGGGGTGGA 11925736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398864578664146