Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq6 123 4e-23 seq17 87.8 3e-12 >seq6 Length=26894541 Score = 123 bits (136), Expect = 4e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| |||| || ||||| || ||| |||| || || | || Sbjct 10380423 TGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTCCG 10380482 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || ||||| || || ||| |||||||| || || || ||||||| Sbjct 10380483 ATACTATTGACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAAC 10380542 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || ||||||||||| ||| ||| || | | |||||||||| Sbjct 10380543 AGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTATAATA 10380602 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 10380603 TCCAAAAGGAGTCCAC 10380618 >seq17 Length=14661173 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || |||||||| || || | || || || | Sbjct 1747666 TGCAGATTTTTGTGAAAACCCTCACTGGAAAAACTATCACCTTGGAGGTGGAGAGCTCGG 1747725 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || || || | || || ||| ||| ||||| || ||||| || || | Sbjct 1747726 ATACTATTGATAACGTCAAGACAAAGATCCAAGATAAGGAAGGGATCCCACCGGACCAGC 1747785 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | |||||||| || ||||| | || ||| | | || | |||| || |||| Sbjct 1747786 AAAGGTTGATTTTTGCTGGAAAACAGCTGGAGGATGGTCGCACCCTTGCAGACTACAATA 1747845 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || |||||||||||| | ||||| || Sbjct 1747846 TTCAGAAAGAATCGACTCTGCATTTGGT 1747873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786141694720880