Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq2514 590 7e-164 seq19 93.3 5e-14 seq4 89.7 6e-13 seq3 86.0 7e-12 >seq2514 Length=157033 Score = 590 bits (654), Expect = 7e-164 Identities = 728/990 (74%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 ||||| | ||| |||| ||| | |||||| | ||| |||| ||||| ||||| | Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 |||||||| || || | | |||||| |||| || ||| | || ||| | || || || Sbjct 1271 ATGATTCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 1213 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| || || || || |||||||| ||||| ||| |||| ||||| | ||||| ||||| Sbjct 1212 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1153 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 ||||| |||||||| || ||||| |||| || || || | ||||| ||||| || Sbjct 1152 TATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAAT 1093 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 |||||||| ||||| ||||||| ||| | |||||||| ||||||| | || | || Sbjct 1092 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 1033 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | |||||| | | || | | || ||||| ||||||||||||||| || ||| Sbjct 1032 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCG 973 Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 | | |||||||| || ||||| |||||| || || || || || || || || | ||| Sbjct 972 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGC 913 Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529 || ||| | | ||||| |||||||||| ||| || |||| |||||||| || || Sbjct 912 TGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAAT 853 Query 157530 CTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCC 157589 ||||||||||||||||| |||| | || |||||||| |||||||| || |||||||| || Sbjct 852 CTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 793 Query 157590 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649 || |||||| | ||||| ||||| |||||||| || || | ||| ||||||||| || Sbjct 792 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 733 Query 157650 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATG 157708 | | || || || | | ||| || | ||||| || |||| || || || | | Sbjct 732 TTCTTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 674 Query 157709 GTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCG 157768 |||||| || |||||||| ||||| || || || ||||| || || || ||||| || | Sbjct 673 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 614 Query 157769 GTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCG 157828 | || ||||||||||||| ||| || |||||| | | | || |||||| | | Sbjct 613 GCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAG 554 Query 157829 CCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 157888 | || |||||||| || || |||||||||||||| | || | ||||| ||||| |||| Sbjct 553 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 494 Query 157889 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 157948 | || || |||||||| |||||||| || | ||||| |||| |||||||| | || | Sbjct 493 ATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 434 Query 157949 CCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158008 ||||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| | Sbjct 433 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 374 Query 158009 CACACAACTTCCCACTGGATCTTGCTGCTG 158038 | || || ||||| || || || ||||||| Sbjct 373 CTCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 542 bits (600), Expect = 3e-149 Identities = 729/1014 (72%), Gaps = 8/1014 (1%) Strand=Plus/Plus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | || |||||| | |||| |||||||||||||| || ||||| || Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 || | || | || ||| ||| |||| | || |||||| | || || || || || Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACTTTCTT 158954 | || |||||||| |||||| | || | ||||||| | || ||| ||||| | Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTA 32999 Query 158955 ACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 159014 || || |||||||| ||||| ||| || | | | |||||| | | | || |||||| Sbjct 33000 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGT 33059 Query 159015 CCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTG 159074 ||||| || ||||| ||||| | ||| ||| | || || | |||| |||||| Sbjct 33060 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTT 33119 Query 159075 GCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACGT 159134 || |||||||| || || | ||||| ||||| ||| | || || |||||||| || || Sbjct 33120 GCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG- 33178 Query 159135 CTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT 159190 ||| || | || || || ||||| || || ||||||||||| ||||| ||||| Sbjct 33179 ---ATCCGTGCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTT 33235 Query 159191 TGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTT 159250 ||| || ||||| || || ||||| |||||||| ||||||| || || || || Sbjct 33236 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 33295 Query 159251 TGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACT 159310 ||| || || || ||||| | ||| | ||||| | ||||| || || ||||||||||| Sbjct 33296 TGGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACT 33355 Query 159311 AAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTAT 159370 ||||| || ||||||||||||||||| ||| | | || | || || |||| ||||| Sbjct 33356 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTAT 33415 Query 159371 TCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAA 159430 |||||| | || || |||||||| |||| || ||||| || ||||| || || Sbjct 33416 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 33475 Query 159431 GGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 159490 || ||| | ||||||||| || || |||||||| |||||||| || |||||||| || Sbjct 33476 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTG 33535 Query 159491 GTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTT 159550 ||| || || || || |||| ||||| || || || ||| | |||||||||||||| || Sbjct 33536 GTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 33595 Query 159551 TGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCT 159610 ||| || || | ||| |||||| | |||| | ||||||| ||||| || || Sbjct 33596 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCT 33655 Query 159611 TCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAAC 159670 ||||| || || ||||| ||| || ||| | ||||| |||||||| |||||||| || Sbjct 33656 ACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 33715 Query 159671 GTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGA 159730 ||||| ||||| || |||||| | |||||||| | ||||||||| |||| || || Sbjct 33716 TTTCTATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGA 33775 Query 159731 TCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 ||| || ||||||||| | || ||||| || || |||||||| | || ||||| Sbjct 33776 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 33829 >seq19 Length=16008726 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 159261 GCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTC 159320 || ||||| | ||| | ||||| | ||||| || || ||||||||||| ||| | || Sbjct 8026091 GCTATATTTTGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACGCATTT 8026032 Query 159321 CATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTC 159380 ||||||| ||||||||| ||| | | || | || || ||| |||||||||||| | Sbjct 8026031 CATATGACGGGAGTTGCCGGTGTATTGGGCGTTGCTCTGTTATGTGCTATTCATGGTGCT 8025972 Query 159381 ACAGTTGAAAATACATTAT 159399 || || |||||||| |||| Sbjct 8025971 ACTGTAGAAAATACTTTAT 8025953 >seq4 Length=23188140 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 158221 ATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGG 158280 |||||| ||||| ||||| || | ||||||||||| | || ||||| | ||||| Sbjct 20462752 ATACATCCTAGATGCAGCCGAGAATGCAGGAGTTGAGCTGCCTTATTCTTGCAGGGCTGG 20462693 Query 158281 TGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTC 158340 ||||| | | | ||||| || || | | ||| || |||| || ||| |||| || Sbjct 20462692 GGCTTGTTGTACCTGTGCTGGGAAGGTGGCATCAGGTTCTGTCGACCAGTCTGATGGTTC 20462633 Query 158341 GTTCCTAGACGATGATCAAATCGCAGCA-GGATTTGTTCTTACGTGTGTAGCATATCCAA 158399 ||||| ||||| |||||||| | || | || | | |||| || || || | || |||| Sbjct 20462632 TTTCCTTGACGAGGATCAAAT-GAAGGACGGTTATCTTCTGACTTGCGTTTCCTACCCAA 20462574 Query 158400 CATCTGATTGTGTTGTTGTTACTGATCAAG--AGGAGAACCTTTACTGA 158446 | || |||||||| || ||| | |||| ||| | |||||| |||| Sbjct 20462573 CTTCAGATTGTGTGATTCACACTCA-CAAGGAAGGTG-ACCTTTGCTGA 20462527 >seq3 Length=20216275 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 158264 TACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTT 158323 ||||| || | ||||| ||||||||||||||||| || || |||| || ||||| Sbjct 955890 TACTCATGCAGGGCTGGAGCTTGCTCTTCATGTGCTGGCAAGGTTGTGCAAGGGACTGTG 955831 Query 158324 GATCAGAGTGATCAGTCG-TTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTAC 158382 |||||| |||| || | ||||| || || || || || || | ||| | ||||| || Sbjct 955830 GATCAGTCTGAT-GGTAGCTTCCTTGATGAAGACCAGATAGCGGAAGGTTGGGTTCTCAC 955772 Query 158383 GTGTGTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGA 158433 ||||| || ||||| || |||||| ||| ||| || | ||||||| Sbjct 955771 TTGTGTTGCTTATCCTACGTCTGATGTTGTCATTGAGACACACAAAGAGGA 955721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545256464777120