Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18]
2,514 sequences; 417,286,671 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq17 91.5 3e-13
seq5 87.8 4e-12
seq1 84.2 5e-11
>seq17
Length=14661173
Score = 91.5 bits (100), Expect = 3e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917
|| || || ||||||||||| || ||||| ||||| || || || ||| ||||| ||
Sbjct 8256533 AGGCTAGTTGCTTTTGCTTGCGTGGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATA 8256592
Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977
|||||| | || |||||||| |||||||| || | | || || || | || ||||||
Sbjct 8256593 TTTTGGTTAAAAAAGCGTGGGTTGATGCCGGGGTTAACCTTTTCAAACGAGTTGATCTCG 8256652
Query 131978 AGAGATGAAG 131987
|||||||||
Sbjct 8256653 CGAGATGAAG 8256662
>seq5
Length=25802683
Score = 87.8 bits (96), Expect = 4e-12
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 110522 TTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA 110581
||||||||| || | || || ||||| |||||||| || |||||| |||| || ||
Sbjct 20777526 TTGCTTTCTCCTGTGCATGAAAGATGACAGCATTGAAGGCATATATGATACTCTGAAGGA 20777585
Query 110582 AACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTC 110641
|||| ||||| ||| ||||||||||||||||| |||||| |||| | | |
Sbjct 20777586 GTGTGCTGTTATTAGCAAATTAGCTGGAGGAATTGGTATTGCTGTTCATAATATCCACGC 20777645
Query 110642 AAAAGG-AGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700
| ||| || | ||| | | || ||| |||| | ||| | ||||| ||| |
Sbjct 20777646 CACAGGCAGTTACATTCGGGGGA-CAAATGGTACTTCCAATGGTATAGTTCCCATGCTTC 20777704
Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740
|||| |||||| ||||||| ||||| ||||||| ||
Sbjct 20777705 GAGTGTTCAACAACACTGCTCGCTATGTTGATCAAGGAGG 20777744
>seq1
Length=48367220
Score = 84.2 bits (92), Expect = 5e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464
||||| |||| |||| | || ||| | ||||||||||| ||||||||||| ||||||
Sbjct 34059823 ACATTGAGATTTAATGAATCTGTTTGCAACCCTTATAATGCTGATTTTGATGGTGATGAA 34059764
Query 305465 ATGAATATGCATGTACCTCAATCA 305488
|||||||||||||| || ||| ||
Sbjct 34059763 ATGAATATGCATGTCCCGCAAACA 34059740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186774572017954
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |