Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq17 91.5 3e-13 seq5 87.8 4e-12 seq1 84.2 5e-11 >seq17 Length=14661173 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 || || || ||||||||||| || ||||| ||||| || || || ||| ||||| || Sbjct 8256533 AGGCTAGTTGCTTTTGCTTGCGTGGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATA 8256592 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977 |||||| | || |||||||| |||||||| || | | || || || | || |||||| Sbjct 8256593 TTTTGGTTAAAAAAGCGTGGGTTGATGCCGGGGTTAACCTTTTCAAACGAGTTGATCTCG 8256652 Query 131978 AGAGATGAAG 131987 ||||||||| Sbjct 8256653 CGAGATGAAG 8256662 >seq5 Length=25802683 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 110522 TTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA 110581 ||||||||| || | || || ||||| |||||||| || |||||| |||| || || Sbjct 20777526 TTGCTTTCTCCTGTGCATGAAAGATGACAGCATTGAAGGCATATATGATACTCTGAAGGA 20777585 Query 110582 AACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTC 110641 |||| ||||| ||| ||||||||||||||||| |||||| |||| | | | Sbjct 20777586 GTGTGCTGTTATTAGCAAATTAGCTGGAGGAATTGGTATTGCTGTTCATAATATCCACGC 20777645 Query 110642 AAAAGG-AGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700 | ||| || | ||| | | || ||| |||| | ||| | ||||| ||| | Sbjct 20777646 CACAGGCAGTTACATTCGGGGGA-CAAATGGTACTTCCAATGGTATAGTTCCCATGCTTC 20777704 Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740 |||| |||||| ||||||| ||||| ||||||| || Sbjct 20777705 GAGTGTTCAACAACACTGCTCGCTATGTTGATCAAGGAGG 20777744 >seq1 Length=48367220 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 ||||| |||| |||| | || ||| | ||||||||||| ||||||||||| |||||| Sbjct 34059823 ACATTGAGATTTAATGAATCTGTTTGCAACCCTTATAATGCTGATTTTGATGGTGATGAA 34059764 Query 305465 ATGAATATGCATGTACCTCAATCA 305488 |||||||||||||| || ||| || Sbjct 34059763 ATGAATATGCATGTCCCGCAAACA 34059740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186774572017954