Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq2514 571 2e-158 seq12 86.0 2e-12 >seq2514 Length=157033 Score = 571 bits (632), Expect = 2e-158 Identities = 709/961 (74%), Gaps = 10/961 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 |||||||||||| |||| |||||||| |||||||||| | | | | || || Sbjct 1304 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACT 1245 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || |||||||| || || ||||| ||||||||||| || || || Sbjct 1244 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGA 1186 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || |||||||||||||| ||||| || || ||| | |||| | Sbjct 1185 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTAC 1126 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | || || || || | ||||| |||||||| |||||||| || |||||||| Sbjct 1125 TTCTGCG--GCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAA 1068 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | |||||||| || || | | || | || | |||||| | |||| | | Sbjct 1067 TGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1008 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||||||||| || |||||||||||||| | || || || ||| | ||||||||| | Sbjct 1007 TGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 948 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || ||||| ||||| || || |||| || ||||| | | || || | || Sbjct 947 GTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGT-TTTCTTGATTTATCCAATCGG 889 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || || || || |||| |||||| | || ||||| ||||| || |||| ||| | Sbjct 888 TCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGAT 829 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || ||||| || |||||||| || |||||| | || || ||||| Sbjct 828 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGG 769 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGT 20127 ||||||||| || || ||||||||||| ||||| ||||| | || || || | | ||| Sbjct 768 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGA 710 Query 20128 GC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186 | | || || || ||| | ||| | || | ||||||| ||||| ||||| |||| Sbjct 709 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAG 650 Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246 | || ||||| |||||||||||||||||||| ||||| || |||||||||||||| ||| Sbjct 649 AAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 590 Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 20306 ||| ||||| |||||| |||| |||||| | ||||| ||||| || ||||| || | Sbjct 589 GTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCT 530 Query 20307 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACC 20366 ||||| |||| || || || || ||||| || ||||| || |||||||| || |||| Sbjct 529 GGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACC 470 Query 20367 AGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTG 20426 | || | | || | | |||||||| ||| |||| |||||||| ||| | || |||| Sbjct 469 AATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTG 410 Query 20427 CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTG 20486 |||| || || | || || ||||||||||| ||||||||||| ||||| || ||||| | Sbjct 409 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAG 350 Query 20487 C 20487 | Sbjct 349 C 349 >seq12 Length=14929429 Score = 86.0 bits (94), Expect = 2e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 || |||| ||||| ||||| ||||| || ||||| ||| |||||||||||||||| ||| Sbjct 13222986 GGCTACAGATTTGGTCAAGATGAAGAAACTTATAATATCATAGCCGCTCATGGTTATTTT 13222927 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAA 20256 | | |||||||| |||||| || ||| ||||| Sbjct 13222926 CGCCAATTGATCTTTCAATACCCTAGTTTTAACAA 13222892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148824356902212