Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 1e-14 seq1 95.1 1e-14 seq15 84.2 2e-11 >seq7 Length=15101417 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||||||||| ||||| || | | ||||| || || ||||||||||| || || Sbjct 1458443 ACGCAAGCGCAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGT 1458502 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || || | | |||| || | |||||||||||| || ||||| Sbjct 1458503 GCGCCCATCCTCTAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGGGGGATGCC 1458562 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || |||||| || | | || | || || | ||| || || | Sbjct 1458563 CTCTTTGTCCTGGATTTTTGCCTTGACATTATCGATGGTGTCAGAGCTCTCTACCTCCAA 1458622 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| ||| || | |||||||||||| Sbjct 1458623 GGTAATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCAT 1458664 >seq1 Length=48367220 Score = 95.1 bits (104), Expect = 1e-14 Identities = 284/429 (66%), Gaps = 21/429 (5%) Strand=Plus/Minus Query 46851 GTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAA--- 46907 || ||||| | ||||| ||||| |||||| || || |||| |||||| ||| Sbjct 31903279 GTGGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGG-TTAAAA--AAACGT 31903223 Query 46908 GGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACAC 46967 || ||||||| |||||||| ||| ||||||||||||||||| || ||||| || || Sbjct 31903222 GGGCTAATGCCAGGCCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGGCTTCAT 31903163 Query 46968 ACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACG 47027 || || ||||||||| ||||| || || |||| || || || | | | Sbjct 31903162 TGTGATTTCGCGTGTCTCCTTTACA------GCCTG-TTGAGGAA-GAAGCTGAGTGAGG 31903111 Query 47028 A--TCCTGA---GCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGG 47082 | | ||| | || | | ||| || ||| || || | ||||||| | | Sbjct 31903110 AGCGCGTGAAGGGGATAGTGAAGGAAGCTGTGGATATAGAGAGGGAGTTTGTGGTGGACT 31903051 Query 47083 CGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTG 47142 |||| || ||| ||| |||| ||||| | ||| ||| | | ||||||||||||| Sbjct 31903050 CGCTACCATGCGCGTTGGTGGGGATGAATGGGGAGTTGATGAGTCAGTATATTGAGTTTG 31902991 Query 47143 TGGCGGATCGTCTGTT-GGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCG 47201 | || ||| | ||||| ||||| ||| || ||| | |||| |||||| Sbjct 31902990 TAGCTGATAGGCTGTTGGGTGC-GCTTGGGTGCGGGAAGGTGTACAATGTGGCTAATCCA 31902932 Query 47202 TTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTC 47261 ||||| | ||| | || || | | || || || ||||| |||||||| ||||| Sbjct 31902931 TTTGATTGGATGGAGTTGATATCCTTGCAAGGGAAGACAAATTTCTTCGAGAAGAGAGTC 31902872 Query 47262 GGAGAGTAT 47270 ||||||||| Sbjct 31902871 GGAGAGTAT 31902863 >seq15 Length=15134944 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||| | ||||| || | | ||||| || || ||||||||||| | ||||| Sbjct 12612261 CAAGCGAAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTACG 12612320 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 || ||||||||||| || | | || |||||||||||||| || || || ||||| Sbjct 12612321 GCCGTCCTCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGATCCGGTGGGATACCTTC 12612380 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| || ||| | | || ||||| || | | ||| || |||| || Sbjct 12612381 CTTGTCTTGAATCTTGGCTTTGACATTGTCAACAGTGTCTGAGGACTCAACCTCGAGGGT 12612440 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || |||| ||||| | ||| |||||||| Sbjct 12612441 TATTGTCTTGCCCGTCAAGGTTTTCACGAAGATCTGCAT 12612479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476596222493040