Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq17 237 2e-56 seq1 235 8e-56 >seq17 Length=14661173 Score = 237 bits (262), Expect = 2e-56 Identities = 407/579 (70%), Gaps = 15/579 (3%) Strand=Plus/Plus Query 1455731 GATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTA 1455789 || ||||| |||| || ||| |||||||||| | |||| || ||||| ||||| Sbjct 8256089 GAAAACCCAGACCGGTTCTGTA-TGTTCCCCATTCAGTACCCATCAATCTGGGAGATGTA 8256147 Query 1455790 CCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGG 1455849 | | |||| | ||||||||||||||||| || ||||||||||| ||| | || | Sbjct 8256148 CAAGAAAG-CTGAGGCCTCCTTTTGGACTGCTGAGGAGGTCGATCTCTCGTCGGATATCC 8256206 Query 1455850 TCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909 |||||||| |||| ||||||| || |||||| || ||||| ||||| | Sbjct 8256207 GCCACTGGGAAAACCTGACTCCCGACGAGAAGCACTTCATCTCTCATGTCCTTGCCTTCT 8256266 Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969 | ||||||| ||||| || || ||| || || ||||| || || |||||||||||| Sbjct 8256267 T-CGCCGCCTCTGATGGGATTGTCCTCGAAAATCTCGCCGGGCGTTTCATGAAAGAGGTC 8256325 Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029 ||| | | ||||| ||| |||||||| ||||||||||| || || || |||||||| Sbjct 8256326 CAAGTCTCGGAGGCGCGTGCTTTTTACGGATTCCAGATCGCGATTGAGAATATCCACTCA 8256385 Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089 || | ||| || ||| | || || || ||||||| | | |||||| | | || Sbjct 8256386 GAGATGTACAGTCTTCTGTTGGAGACTTATATCAAGGATTCTGAGGAGAAGAATCGTCTG 8256445 Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGG 1456149 |||| || ||||| |||||||||| ||| || ||||| ||||| || |||| Sbjct 8256446 TTTCATGCTATCGAAACGGTGCCGTGTGTGGCTAAGAAGGCACGGTGGGCCTTGCGGTGG 8256505 Query 1456150 ATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAG 1456207 || || |||| ||| | ||| || ||| |||| || | ||||| |||| || Sbjct 8256506 ATTGAC-GGGAG-----CGAGAGTTTCGCGGAGAGGCTAGTTGCTTTTGCTTGCGTGGAA 8256559 Query 1456208 GGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATG 1456267 || || ||||||||||| ||||| || || || |||||| | || ||||| || | ||| Sbjct 8256560 GGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTAAAAAAGCGTGGGTTGATG 8256619 Query 1456268 CCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGA 1456306 |||| || |||| ||||| || ||| |||||| Sbjct 8256620 -CCGGGGTTAACCTTTTCAAACGAGTTGATC--TCGCGA 8256655 >seq1 Length=48367220 Score = 235 bits (260), Expect = 8e-56 Identities = 402/566 (71%), Gaps = 18/566 (3%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGC-GATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTA-CCAG 1455772 ||||| || || ||| || ||||| ||||||| ||| ||||||| || | || ||| Sbjct 31903759 GAGCCCCTCCT-CGCTGAAAACCCAGACCGCTTCTGTA-TGTTCCCAATTCAATATCCAT 31903702 Query 1455773 CGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGA 1455832 | || ||||| |||||| | |||| | || ||||| |||||||| || || |||||||| Sbjct 31903701 CA-ATCTGGGAGATGTACAAGAAAG-CTGAAGCCTCATTTTGGACGGCTGAAGAGGTCGA 31903644 Query 1455833 CCTCGGCGCCGACA-CGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCA 1455891 ||| | || ||||| |||||| |||| |||||| || ||||| Sbjct 31903643 TCTCTCTTCAGATGTCGGTC-ACTGGGAAAACCTGACTCCTGACGAGAAACACTTCATTT 31903585 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||| ||||| || ||||||| ||||| ||||| |||||| | ||||| Sbjct 31903584 CTCACGTCCTTGCCTTCTT-CGCCGCCTCTGATGGAATCGTCCTCGAGAATATCGCCGGG 31903526 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || |||||||| |||||| | | ||||| ||| || ||||||||||||||||| Sbjct 31903525 CGTTTCATGAAAGAAGTCCAAGTCTCGGAGGCGCGTGCTTTCTACGGGTTCCAGATCGCG 31903466 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || || |||||||| || | ||| || || | || |||||| ||||||| | Sbjct 31903465 ATTGAGAATATCCACTCAGAGATGTACAGTCTTTTGTTGGAGACCTACATCAAGGATTCT 31903406 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 |||||| ||| ||| |||| ||||| || |||||||||| ||| || ||||| Sbjct 31903405 ACTGAGAAGAACCGCCTGTTTCATGCCATTGAGACGGTGCCGTGTGTGGCTAAGAAGGCG 31903346 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA-CTTTGCCGAGCGGCTCGTC 1456190 || ||||| | ||||||| || ||||| ||| | ||||| ||| || | | Sbjct 31903345 GAGTGGGCTTTACGGTGGATCGAC--GGAGG----CGAGAGTTTTGCGGAGAGGTTAATT 31903292 Query 1456191 GGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | ||||| |||| || || || ||||||||||| ||||| || || || |||||| | Sbjct 31903291 GCTTTTGCTTGCGTGGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTA 31903232 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || || || || || ||||| || || Sbjct 31903231 AAAAAACGTGGGCTAATGCCAGGCCT 31903206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177568720079268