Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq2514 641 4e-179 seq15 109 6e-19 seq19 98.7 1e-15 seq18 87.8 2e-12 >seq2514 Length=157033 Score = 641 bits (710), Expect = 4e-179 Identities = 750/1013 (74%), Gaps = 0/1013 (0%) Strand=Plus/Plus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | ||||||||||| | | || || || || |||||||||||||| || Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || | || |||| ||| ||| | ||| | || |||||| | || || || || ||| Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTC 159558 | || ||||| ||||| || | || |||||||| | |||||| || || | Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTA 32999 Query 159559 ACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159618 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 33000 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGT 33059 Query 159619 CCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTT 159678 ||||| | ||||| || || || ||||| ||| | || || | ||| | |||||| Sbjct 33060 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTT 33119 Query 159679 GCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCGT 159738 ||||||||||| || |||| || |||||||||||| |||| ||||||||| ||||||| Sbjct 33120 GCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33179 Query 159739 CTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTC 159798 || | || ||||| ||||| || || ||||||||||| ||||| |||||||| Sbjct 33180 TCCGTGCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGTT 33239 Query 159799 AGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGG 159858 |||||||| || |||||||| ||||||||| ||||||||||| |||||||| || Sbjct 33240 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGC 33299 Query 159859 GTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAAC 159918 |||||||| || ||| ||||| | | || | || || || || || ||||| || ||| Sbjct 33300 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAAC 33359 Query 159919 CCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCAT 159978 || || ||||||||||||||||| ||| || | || | || ||| | || || || ||| Sbjct 33360 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCAT 33419 Query 159979 GGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCG 160038 |||||||||||||| || || || ||||||||||| || ||||| ||||| || Sbjct 33420 GGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCT 33479 Query 160039 TTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCG 160098 ||| | || ||||||| ||||| |||||||| |||||||| || |||||||| ||||| Sbjct 33480 TTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTGGTCC 33539 Query 160099 CAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTG 160158 || || || || ||||| ||||| || || || ||| | ||||| || ||||| ||||| Sbjct 33540 CAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 33599 Query 160159 CCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGT 160218 || || | ||| |||||| || |||| | ||||||| ||| | ||||| ||| Sbjct 33600 CCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACGT 33659 Query 160219 GCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTC 160278 || || || ||||| |||||| || | ||||| |||||||||||||||||||| ||| Sbjct 33660 GCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTC 33719 Query 160279 TACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAA 160338 || ||||| || || || || |||||||| |||||||||||||||| || ||||| Sbjct 33720 TATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAG 33779 Query 160339 CCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 || ||||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 33780 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 33832 Score = 610 bits (676), Expect = 8e-170 Identities = 733/991 (74%), Gaps = 4/991 (0%) Strand=Plus/Minus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 |||||| | ||| ||||| || | |||||| | ||| |||| ||||| ||||| | Sbjct 1332 CTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTT 1273 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||||||||||| || | | |||||| ||||| || || |||| ||| | ||||| | Sbjct 1272 GATGATTCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 1214 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | || || |||||||| || || || ||||| ||| |||| || || | ||||| |||| Sbjct 1213 CTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1154 Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCA 157913 | ||||| |||||||| || |||||| ||| || || || | ||||| ||||| | Sbjct 1153 ATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAA 1094 Query 157914 TCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAG 157973 | |||||||| ||||| |||| || ||| | || ||||| ||||||| | || | | Sbjct 1093 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTG 1034 Query 157974 TATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACC 158033 | | |||||| | | || | | || ||||| |||||||||||||| || || Sbjct 1033 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCC 974 Query 158034 GTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTG 158093 || | |||||||| || ||||| ||| |||||||| ||||| || || || || | || Sbjct 973 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTG 914 Query 158094 CAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158153 | || ||| | | ||||| |||||||||| ||| || |||| |||||||| || | Sbjct 913 CTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAA 854 Query 158154 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158213 |||||||||||||||||| ||| |||||||||| || || ||||||||||||||||||| Sbjct 853 TCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 794 Query 158214 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158273 | || || ||| | || || ||||| |||||||| || || || ||| ||||||||||| Sbjct 793 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 734 Query 158274 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAC 158332 | | | || || || | | | || | ||||| || |||| || || || | Sbjct 733 GTTCTTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 675 Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTC 158392 ||||| | || |||||||| ||||| || || || ||||| || || ||||| || || Sbjct 674 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 615 Query 158393 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158452 || || |||||||||||||| ||| || |||||||| ||||| || || |||||| | Sbjct 614 GGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTA 555 Query 158453 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 158512 ||||| |||||||| || || ||||||||||| || | || | || ||||| ||| Sbjct 554 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 495 Query 158513 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158572 || || || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 494 AATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 435 Query 158573 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158632 |||||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| Sbjct 434 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 375 Query 158633 GCACACAACTTCCCACTGGATCTTGCTGCTG 158663 || || || ||||| || || || ||||||| Sbjct 374 GCTCATAATTTCCCTCTAGACCTAGCTGCTG 344 >seq15 Length=15134944 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 160257 AGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGC 160316 |||||||||||||||||| |||| ||||| || || || || ||| || | ||||| | Sbjct 11738122 AGATCCTGAATTTGAGACTTTCTGTACCAAAAATATTCTTTTAAATAAAAGCATTCGTAC 11738063 Query 160317 TTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACC 160376 ||||||||| || ||||| || ||||||||| |||| ||||||||| | || ||||| Sbjct 11738062 TTGGATGGCGACTTAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGAAGGTTCTACC 11738003 Query 160377 TAGAGGTAACGCACTGTGATTAA 160399 | || ||||| || | || || Sbjct 11738002 CCGTGGAAACGCTCTTTAATGAA 11737980 >seq19 Length=16008726 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/149 (75%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 159864 AGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTT 159923 ||| || ||| ||||| | | || | || || || || || ||||| || ||| | || Sbjct 8026092 AGCTATATTTTGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACGCATT 8026033 Query 159924 CCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGC 159983 ||||||| ||||||||| ||| || | || | || ||||| ||||| || |||||||| Sbjct 8026032 TCATATGACGGGAGTTGCCGGTGTATTGGGCGTTGCTCTGTTATGTGCTATTCATGGTGC 8025973 Query 159984 TACTGTAGAGAACACATTGTTTGAAGATG 160012 ||||||||| || || || ||||||||| Sbjct 8025972 TACTGTAGAAAATAC-TTTATTGAAGATG 8025945 >seq18 Length=14966190 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 157716 TTGGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATC 157774 |||| ||||| ||||| ||||||||||||| || | | |||||| ||||| || || Sbjct 5914787 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACT-TCTGTATTTATT 5914845 Query 157775 GTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGT 157834 |||| ||| | | | | || || | |||||||| || || || ||||| || |||| Sbjct 5914846 ATCGCTTTCATTGATACCCCTCCAATAGACATTGATGGTATTCGTGAACCTTTTTCTGGA 5914905 Query 157835 TCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTT 157883 | | || ||||| ||||| ||||| | |||||| || |||||| || Sbjct 5914906 TTA--AATTTATGGAAACAATATCATTTATGGTGCCATTATTCCTACTT 5914952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573005992720800