Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq2514 556 2e-153 seq13 118 1e-21 seq1667 84.2 3e-11 >seq2514 Length=157033 Score = 556 bits (616), Expect = 2e-153 Identities = 701/960 (73%), Gaps = 2/960 (0%) Strand=Plus/Minus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 ||||| || ||| | || ||||| || || |||||||||| ||| | ||| | |||||| Sbjct 1304 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACT 1245 Query 177936 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 177994 ||||| || || |||| ||| | ||||| || || || ||||| || || || ||||| Sbjct 1244 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGA 1186 Query 177995 ACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATC 178054 ||| || |||| || || | ||||| ||||| ||||| |||||||| || |||| | Sbjct 1185 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTAC 1126 Query 178055 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 178114 ||| || || || | ||||| || || || |||||||| ||||| ||||||| || Sbjct 1125 TTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1066 Query 178115 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGC 178174 | | || ||||| ||||||| | || | || | |||||| | ||||| | | Sbjct 1065 GTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1006 Query 178175 ATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGT 178234 |||||||| ||||||||||||||| | |||| | |||||||| || ||||| ||| Sbjct 1005 TTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 946 Query 178235 AGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCA 178294 ||||| || ||||| || || || || | || || ||| || | ||||| ||||||| Sbjct 945 TGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCA 886 Query 178295 AGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGT 178354 ||| ||||| || | ||||| || || ||||||||||| || |||| ||| |||| Sbjct 885 AGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGT 826 Query 178355 TTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGT 178414 ||||| || || |||||||| || |||||||| || |||||||| || || || ||||| Sbjct 825 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 766 Query 178415 ATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCG 178474 |||||| || || || |||||||| ||||| ||||||||||| || ||| | | | Sbjct 765 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAG 706 Query 178475 TGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC 178534 ||||| || |||| ||||| || | ||||| | || || ||||| ||||| || Sbjct 705 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 646 Query 178535 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATT 178594 || || ||||| || || ||||| || || || || |||||||||||||||||| || Sbjct 645 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 586 Query 178595 CAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178654 |||||||| ||||| | || |||||| | || || ||||||||||| || |||||||| Sbjct 585 TAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 526 Query 178655 CACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178714 ||| || | || | ||||| ||||| || || || ||||| ||||| |||||||| || Sbjct 525 CACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATC 466 Query 178715 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178774 | | || | ||||| ||||| | || || ||||| || | | |||||||| Sbjct 465 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAA 406 Query 178775 TCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGC 178834 || || |||||||| ||||| || || || || || || ||||| || || || || || Sbjct 405 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGC 346 Score = 500 bits (554), Expect = 1e-136 Identities = 706/989 (71%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| || || || |||||||||||||| || || | || Sbjct 32830 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGTCTATTGCTCT 32889 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| ||||| | || |||||| | || || ||| | ||||| || | Sbjct 32890 TTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCAT 32949 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTG 179412 |||| ||||| || | || ||||||||| | || ||| ||||| | || || || | Sbjct 32950 GGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTAACCGCCGCAG 33009 Query 179413 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179472 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 33010 TTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGTCCTGAAGCAC 33069 Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 179532 | || |||| || ||||| ||| | || || | |||| ||| || |||||||||| Sbjct 33070 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTTGCTCTCCACG 33129 Query 179533 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGTA 179592 | || |||| || || ||||| ||| | | ||||||||||||||||| | || | Sbjct 33130 GAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA-TCCGTGCAA 33188 Query 179593 TCA-GACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTC 179651 | | ||||||| ||||| || || || |||||||| ||||| || || || ||| ||| Sbjct 33189 TTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGTTTCTGTATTC 33248 Query 179652 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 179711 || || ||||| | || ||||| |||||| || ||||| ||||| || || || Sbjct 33249 CTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCT 33308 Query 179712 ATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCAT 179771 || || | ||| | || || | || || || || || ||||| || ||||| || ||| Sbjct 33309 ATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACCCATTTCAT 33368 Query 179772 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACT 179831 |||||||||||||| ||| || | || | || ||||| | ||||| ||||| | |||| Sbjct 33369 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACT 33428 Query 179832 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCG 179891 ||||| ||||| || | ||||||||| || |||||||| || || ||| | | Sbjct 33429 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 33488 Query 179892 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 179951 || || | ||||| |||||||| |||||||| || |||||||| ||||| || || || Sbjct 33489 ACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTGGTCCCAAATTTTT 33548 Query 179952 GGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 180011 || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 33549 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 33608 Query 180012 GGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGAT 180071 ||| |||||| || |||| | ||||||| ||||| ||||| ||||| || || Sbjct 33609 GGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACGTGCCTATGAC 33668 Query 180072 TTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAG 180131 ||||| |||||| ||| | ||||| |||||||| || |||||||| ||||| ||||| Sbjct 33669 TTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAA 33728 Query 180132 AACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAG 180191 || |||||| | |||||||| | ||||| ||| |||| | ||||| || ||||| Sbjct 33729 AATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 33788 Query 180192 TCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 | ||||||| || || ||||| || Sbjct 33789 AACCTTATATTCCCTGAGGAGGTTCTACC 33817 >seq13 Length=15658869 Score = 118 bits (130), Expect = 1e-21 Identities = 242/357 (68%), Gaps = 2/357 (1%) Strand=Plus/Plus Query 178302 TTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 178361 ||||| || | |||| || || || | |||||| || |||| ||| |||| ||| || Sbjct 4833148 TTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTTAACTTTATGATTGTATTCTAA 4833207 Query 178362 GCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGT 178421 || || || |||| || || |||| || |||||||| || || ||||| ||| | | Sbjct 4833208 GCTGAGCATTACATCCTTATAGACCCATTTCACATGTTAGGCGTAACAGGTTTATGCAAT 4833267 Query 178422 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTG-AAAC 178480 | || | | || || ||||| |||| |||||| || ||| | | | || | |||| Sbjct 4833268 GACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACCTCTA-ATTTGATCAAGGAAAC 4833326 Query 178481 GACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAA 178540 | ||| ||||| || | ||||| | || || ||| | ||||| || || | Sbjct 4833327 CAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGGTCAAAAGGAAGAAACTTATGA 4833386 Query 178541 CATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAA 178600 |||||| | || ||||| | || || | ||||||| |||||||| || |||| Sbjct 4833387 CATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTTCTAATATGCTAGTTTTAACAG 4833446 Query 178601 CTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCAC 178657 ||| | ||| | || |||||| | | | |||||| || | || ||||||||||| Sbjct 4833447 CTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATCTGGTTCAC 4833503 >seq1667 Length=4831 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | | ||| || ||||| ||||||||||||||||| || | || Sbjct 2915 TGGATGACTGGTTACGAAAGGACCGTTTTGTTTTTGTGGGTTGGTCTGGTCTATTGCTCT 2974 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| ||||| | || |||||| | || | | | | ||||| || | Sbjct 2975 TTCCTTATGCCTATTTTGCCTTAGGGGGTTGGTTCACAGTTATAACCTTTGTAACCTCAT 3034 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTG--AGGGTGCTAACTTTCTTACGGCAGC 179410 |||| ||||| || | || ||||||||| ||| ||| ||| ||||| | || || | Sbjct 3035 GGTATACCCATGGATTGGCCAGTTCCTAT-TTGAAAGGTTGC-AACTTCTTAACCGCTGT 3092 Query 179411 TGTCTCGACGCCTGCTGAT 179429 || || || |||||| || Sbjct 3093 AGTTTCTACTCCTGCTAAT 3111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605990556148320