Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq2514 590 7e-164 seq19 91.5 2e-13 seq1667 82.4 8e-11 >seq2514 Length=157033 Score = 590 bits (654), Expect = 7e-164 Identities = 712/963 (74%), Gaps = 4/963 (0%) Strand=Plus/Minus Query 158406 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 158465 ||||| || ||| | || ||||| || || |||||||||| ||| | ||| | ||||| Sbjct 1304 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACT 1245 Query 158466 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 158524 ||||| || || |||| ||| | ||||| || || || ||||| || || || ||||| Sbjct 1244 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGA 1186 Query 158525 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATC 158584 ||| || |||| || || | ||||| ||||| ||||| |||||||| || | || | Sbjct 1185 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTAC 1126 Query 158585 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 158644 ||| || || || | ||||| || || || |||||||| ||||| ||||||| || Sbjct 1125 TTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1066 Query 158645 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGC 158704 | | || ||||| ||||||| | || | || | |||||| | | || | | Sbjct 1065 GTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1006 Query 158705 ATATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGT 158764 || ||||| ||||| ||||||||| | ||| | |||||||| || ||||| ||| Sbjct 1005 TTACATGGGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 946 Query 158765 AGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 158824 |||||||| || || || || || || ||||||| ||| | | ||||| ||||||| Sbjct 945 TGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCA 886 Query 158825 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 158884 ||| ||| || |||| |||||||| || ||||||||||||||||||| ||| |||| Sbjct 885 AGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGT 826 Query 158885 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGT 158944 |||||| || || |||||||||||||||||||| || || ||| | || || ||||| || Sbjct 825 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 766 Query 158945 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC- 159003 |||||| || || || ||| |||||||||||| | | || || || | | | || Sbjct 765 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGATCA 707 Query 159004 GTGAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAA 159063 | ||||| || |||| || || || | ||||||| || || ||||| ||||||| Sbjct 706 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAA 647 Query 159064 CATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCAT 159123 | ||||||||||| || || |||||||| || || || |||||||||||||| ||| | Sbjct 646 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 587 Query 159124 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGT 159183 | |||||||| ||||| || || |||||| | ||||| |||||||| || || ||||||| Sbjct 586 TTAACAACTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGT 527 Query 159184 TCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 159243 |||| || | || | || ||||| ||||| || || |||||||| |||||||| | Sbjct 526 TCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAAT 467 Query 159244 CCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAG 159303 | | ||||| |||| |||||||| | || |||||||| ||| | | |||||||| Sbjct 466 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 407 Query 159304 GTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTG 159363 || |||||||||||||||||||| ||||| || || || ||||| || ||||| |||| Sbjct 406 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTG 347 Query 159364 CTG 159366 ||| Sbjct 346 CTG 344 Score = 515 bits (570), Expect = 4e-141 Identities = 730/1023 (71%), Gaps = 10/1023 (1%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| |||||||||||||| || ||||| || Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| |||| | || |||||| | || || ||||| || Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTT 160078 | ||| ||||||||||||||| | || ||||||||| | || ||| ||||| | Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTA 32999 Query 160079 ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 160137 || || ||||| ||||| ||| | | | | |||||| || || || || ||||| Sbjct 33000 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCT-TTATTATTACTATGGGG 33058 Query 160138 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGT 160197 |||||| || ||||| ||||| | ||| ||| | || || | |||| |||||| Sbjct 33059 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGT 33118 Query 160198 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 160257 || ||||| || || |||| ||||| || || ||| | ||||| |||||||| || || Sbjct 33119 TGCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 33178 Query 160258 TCTCATCGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCT 160313 ||| || | || ||||| ||||| || || ||||||||||| ||||| || | Sbjct 33179 ----ATCCGTGCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTT 33234 Query 160314 TTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCT 160373 |||| |||||||| || || ||| | |||||||| ||||||| || || || | Sbjct 33235 TTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTT 33294 Query 160374 TTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGC 160433 |||| || ||||| || ||| ||||| | | || | ||||||||||| || ||||| | Sbjct 33295 TTGGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACAC 33354 Query 160434 TTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCA 160493 | ||||| || ||||||||||||||||| ||| || | || | || ||||| | || | Sbjct 33355 TGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTA 33414 Query 160494 TCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTA 160553 | ||||| | ||||||||| || || | | ||||||||| || |||||||| || Sbjct 33415 TTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCC 33474 Query 160554 AGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 160613 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| | Sbjct 33475 GTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTT 33534 Query 160614 GGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 160673 |||| || || || || |||| ||||| || || || ||| | ||||| || ||||| | Sbjct 33535 GGTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 33594 Query 160674 TTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATC 160733 |||| || || | ||| | |||| | |||| | ||||||| ||||| || | Sbjct 33595 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACC 33654 Query 160734 TTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGA 160793 | ||||| || || ||||| ||| || || | ||||| |||||||| |||||||||| Sbjct 33655 TACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGA 33714 Query 160794 CCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCG 160853 | ||||| ||||| || || || | |||||||| | ||||| ||| | || || | Sbjct 33715 CTTTCTATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAG 33774 Query 160854 ACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTT 160913 | || || ||||| ||| |||| ||||| || || ||||| || | || ||||| |||| Sbjct 33775 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTT 33834 Query 160914 AAT 160916 ||| Sbjct 33835 AAT 33837 >seq19 Length=16008726 Score = 91.5 bits (100), Expect = 2e-13 Identities = 120/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 160384 AGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTT 160443 ||| || ||| ||||| | | || | ||||||||||| || ||||| || ||| | || Sbjct 8026092 AGCTATATTTTGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACGCATT 8026033 Query 160444 CCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGT 160503 ||||||| ||||||||| ||| || | || | || ||| | |||| || ||||| | Sbjct 8026032 TCATATGACGGGAGTTGCCGGTGTATTGGGCGTTGCTCTGTTATGTGCTATTCATGGTGC 8025973 Query 160504 TACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATAC 160548 ||||||||| || || | | |||||||| || |||||||| Sbjct 8025972 TACTGTAGAAAATACTTTAT-TGAAGATGATGATGGTGCAAATAC 8025929 >seq1667 Length=4831 Score = 82.4 bits (90), Expect = 8e-11 Identities = 124/174 (71%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | | ||| ||||| |||||||| || |||||||| Sbjct 2905 TTTGATATTATGGATGACTGGTTACGAAAGGACCGTTTTGTTTTTGTGGGTTGGTCTGGT 2964 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| |||| | || |||||| | || | | ||| || Sbjct 2965 CTATTGCTCTTTCCTTATGCCTATTTTGCCTTAGGGGGTTGGTTCACAGTTATAACCTTT 3024 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTG--AGGGTGCAA 160070 | ||| ||||||||||||||| | || ||||||||| ||| ||| ||||| Sbjct 3025 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTAT-TTGAAAGGTTGCAA 3077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552456238517120