Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq2514 600 1e-166 >seq2514 Length=157033 Score = 600 bits (664), Expect = 1e-166 Identities = 730/990 (74%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | || ||| | ||| |||| ||||| ||||| || Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||||||||| || | | |||||| ||||| || || | |||||| | || || || Sbjct 1271 ATGATTCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 1213 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || || ||||| || || |||||||| || |||| || || | ||||||||||| Sbjct 1212 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1153 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 ||||| |||||||| || | || | ||| || || || | ||||| ||||| || Sbjct 1152 TATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAAT 1093 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| ||||| | ||||| ||| | || ||||| ||||||| | || | || Sbjct 1092 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 1033 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | || ||||| ||||||||||||||| || ||| Sbjct 1032 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCG 973 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| ||||||||||| ||||| ||||||||| || || || || || || || | ||| Sbjct 972 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGC 913 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 || ||| | | ||||| |||||||||| ||| || |||| |||||||| || || Sbjct 912 TGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAAT 853 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 ||||||||||||||||| ||| |||||||||| || || |||||||||||||||||||| Sbjct 852 CTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 793 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 || || ||| | || || ||||| |||||||| || || || ||| ||||||||| || Sbjct 792 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 733 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATG 179518 | | || || || | | ||| || | ||||| || || | || || || | | Sbjct 732 TTCTTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 674 Query 179519 GTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 179578 |||| | || || ||||| ||||| || ||||| ||||| || || ||||| || || | Sbjct 673 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 614 Query 179579 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTG 179638 | || ||||||||||||||||| ||||||||||| || ||||| || |||||| | | Sbjct 613 GCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAG 554 Query 179639 CTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCA 179698 |||| ||||| || || || ||||||||||||||| | || | || ||||| |||| Sbjct 553 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 494 Query 179699 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACA 179758 | || || |||||||| |||||||| || | |||| ||||||| ||||| |||| | Sbjct 493 ATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 434 Query 179759 CATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACG 179818 | ||||| || | | |||||||| | |||||||||||||||||||| ||||| | Sbjct 433 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 374 Query 179819 CACACAACTTCCCACTCGACCTTGCTGCTG 179848 | || || ||||| || ||||| ||||||| Sbjct 373 CTCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 540 bits (598), Expect = 1e-148 Identities = 710/981 (72%), Gaps = 2/981 (0%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||| || || |||||||| ||||| || ||| | || |||| ||| ||| ||||| Sbjct 32850 GACCGTTTCGTTTTTGTGGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCC 32909 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || || ||| | ||||| || ||||| ||||| || | || Sbjct 32910 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGGTATACCCATGGATTGGCC 32969 Query 180171 TCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCT 180230 ||||||| | |||||| ||||| | || || || || || || |||||| | | Sbjct 32970 AGTTCCTATTTGGAAGGTTGCAACTTCTTAACCGCCGCAGTTTCTACTCCTGCTAATAGT 33029 Query 180231 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGG 180290 | | |||||| | | |||| ||||||||||| | || || |||| || ||| Sbjct 33030 TTAGCCCATTCTTTATTATTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 33089 Query 180291 TGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGA 180350 || ||| | || || | |||| ||| || ||||||||||| || |||| ||||| || Sbjct 33090 TGTCAATTAGGTGGCTTGTGGACTTTTGTTGCTCTCCACGGAGCTTTCGGACTAATAGGT 33149 Query 180351 TTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATC-CGTCCTTACAATGCTAT 180409 |||||| |||| || |||||||| || || | || || || ||||| ||||| || Sbjct 33150 TTTATGTTACGTCAATTTGAACTTGCTCGA-TCCGTGCAATTACGACCTTATAATGCAAT 33208 Query 180410 TGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCA 180469 |||||||||||||| || || || ||||| ||||| || || || ||||| ||||| Sbjct 33209 CGCATTCTCTGGTCCAATTGCGGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCA 33268 Query 180470 GTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTT 180529 ||| ||||||||||||| || |||||| |||||||| || ||| ||||| | ||||| Sbjct 33269 GTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTCTT 33328 Query 180530 TCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTAT 180589 | | || || || || || ||||| || ||||| || ||||||||||||||||| ||| | Sbjct 33329 TTTCCAAGGATTTCATAATTGGACACTGAACCCATTTCATATGATGGGAGTTGCCGGTGT 33388 Query 180590 ACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGA 180649 | | || | || |||||| || || ||||| | ||||| || || || | | ||| Sbjct 33389 ATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGA 33448 Query 180650 AGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTA 180709 |||||| || ||||| || || || ||| | |||| |||| || |||||||| Sbjct 33449 AGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTA 33508 Query 180710 CTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAA 180769 || |||||||| || |||||||| ||||| || || || || |||| ||||| || || Sbjct 33509 TTCCATGGTCACCGCCAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAATAA 33568 Query 180770 GCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTAT 180829 || ||| | ||||| || ||||| ||||| || || | ||| |||||| || | Sbjct 33569 ACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCT 33628 Query 180830 TGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAG 180889 ||| | ||||||| ||||| ||||| ||||| || || ||||| ||| || ||| | Sbjct 33629 TGGAGTAGTTGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCG 33688 Query 180890 AGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGG 180949 ||||| ||||||||||| || ||||| ||||| ||||| || || || || |||||||| Sbjct 33689 TGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTTTTAAATGAAGG 33748 Query 180950 ACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGA 181009 | ||||| ||| |||| || ||||| || || |||||| | || |||||||| || Sbjct 33749 CATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 33808 Query 181010 AGTTCTACCAAGAGGTAACGC 181030 |||||||| | || ||||| Sbjct 33809 GGTTCTACCCCGTGGAAACGC 33829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610310420392320