Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq17 197 2e-45 seq7 140 4e-28 seq5 136 5e-27 >seq17 Length=14661173 Score = 197 bits (218), Expect = 2e-45 Identities = 377/553 (68%), Gaps = 2/553 (0%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| ||||| |||||||| || || ||||||| || || ||||| ||||| || | Sbjct 8256685 GCACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAA 8256626 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| | ||||||||||| | ||||||||| ||| |||| || || || || Sbjct 8256625 CCCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAA 8256566 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT-TGTATCATTATGTA 39794 || ||||| || ||||| ||||| || ||||| || |||| | || | | Sbjct 8256565 TATCCCTTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACTCTCGCTCCCG-TCAA 8256507 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 ||||| | ||||| || ||||| ||||| |||| ||||| ||||||| || Sbjct 8256506 TCCACCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGAA 8256447 Query 39855 AGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914 | ||| || || || ||| ||| || | ||| || || | | ||||| ||||| | Sbjct 8256446 ACAGACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCT 8256387 Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTT 39974 |||| ||||| || |||||||| ||||| |||||||||||| | || || | | || Sbjct 8256386 CTGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTT 8256327 Query 39975 GTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034 | |||||| || | | || | |||||| || || |||||| ||||| | Sbjct 8256326 GGACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGA 8256267 Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCAT 40094 | || || | ||||| || || | || || ||||| |||| || | ||||| Sbjct 8256266 AGAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGC 8256207 Query 40095 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGT 40154 |||||| || | ||| || || ||||| |||||||| || ||||| || || |||| Sbjct 8256206 GGATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGT 8256147 Query 40155 ACATGTTCCATAT 40167 |||| | ||| || Sbjct 8256146 ACATCTCCCAGAT 8256134 >seq7 Length=15101417 Score = 140 bits (154), Expect = 4e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||| | ||| | || | || ||| |||| ||| || Sbjct 5425448 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 5425507 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||||||| |||||||||||| | || || || || || ||| Sbjct 5425508 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 5425567 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| |||||||| || |||| ||| | |||||| |||||||| |||||||| Sbjct 5425568 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 5425627 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 5425628 TCCTTCAATACTATCATCTTTCATG 5425652 >seq5 Length=25802683 Score = 136 bits (150), Expect = 5e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||| | ||| | || |||| ||| |||| ||| || Sbjct 6278370 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAATGCC 6278429 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| |||||||||||| | || || || || ||| Sbjct 6278430 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 6278489 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| ||||||||||| |||| ||| | |||||| |||||||| |||||||| Sbjct 6278490 TACACCGATTCCTCCTGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 6278549 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 6278550 TCCTTCAATACTATCATCTTTCATG 6278574 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||| ||||||| || ||||| || ||| ||||| | ||||||| |||| |||| || Sbjct 20778377 CTCTCTTTCATACTGAGTATACAGTTTTTCAAATTCTTGTCCCCAACAATCAGCCAAACC 20778318 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| ||| | || || | ||| ||||| |||||| | ||||| || ||| || Sbjct 20778317 TGGAGCCTCACTAGGGCAAAACAAAGACCATTTGTCATCACCTCGAACTCTTTCCATGAA 20778258 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 ||||| |||||||||||||| | || | |||| | || || |||||| Sbjct 20778257 GAGATCAGGAATCCAAAGAGCAAGGAATAAGTCTCGAGCTCGATGTTCTTC 20778207 Score = 86.0 bits (94), Expect = 9e-12 Identities = 161/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | || ||||| || ||||||||||| | ||| | || || | Sbjct 6278748 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAAATGG 6278807 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| |||||||| || ||||| | |||||||| | || || | ||||| | Sbjct 6278808 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 6278867 Query 70111 ATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 || |||||||| | ||| || | ||| | | | |||| ||||| ||| |||| | Sbjct 6278868 ATGTGCTGAGGCCTTTCCACAACCTTTCCT--TGGACCTTCAGGAGGTAGGATCTTTCAA 6278925 Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGA 70223 | || || || ||||| || | || |||||| | || || || || |||| Sbjct 6278926 GGGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGATCTCAGA 6278980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686887213890960