Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq17 134 1e-26 >seq17 Length=14661173 Score = 134 bits (148), Expect = 1e-26 Identities = 253/371 (68%), Gaps = 6/371 (2%) Strand=Plus/Plus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| || ||| | | || || || |||||| || || || || || || || |||| Sbjct 8256318 AAGAGGTCCAAGTCTCGGAGGCGCGTGCTTTTTACGGATTCCAGATCGCGATTGAGAATA 8256377 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | || || || ||||||||||||||| | || || || ||||| ||| | |||||| Sbjct 8256378 TCCACTCAGAGATGTACAGTCTTCTGTTGGAGACTTATATCAAGGATTCTGAGGAGAAGA 8256437 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACC---TGCGATTAAACATAAAGCAGACTGGG 44090 |||| ||||| |||| || ||||| || || || | ||| || ||| |||| Sbjct 8256438 ATCGTCTGTTTCATGCTATCGAAACGGTGCCGTGTGTGGCTAAG---AAGGCACGGTGGG 8256494 Query 44091 CCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 || | ||||| | | || ||| | || | || || || ||||| | Sbjct 8256495 CCTTGCGGTGGATTGACGGGAGCGAGAGTTTCGCGGAGAGGCTAGTTGCTTTTGCTTGCG 8256554 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210 ||||||| || || || || || ||| || |||||||||||||| || || || | Sbjct 8256555 TGGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTAAAAAAGCGTGGGT 8256614 Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270 ||||||| ||||| || |||||||| ||||| || || |||||||| | ||||| | Sbjct 8256615 TGATGCCGGGGTTAACCTTTTCAAACGAGTTGATCTCGCGAGATGAAGGGCTTCATTGTG 8256674 Query 44271 ATTTTGCTTGC 44281 |||| || ||| Sbjct 8256675 ATTTCGCGTGC 8256685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443822196570