Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq15 134 1e-26 seq12 116 3e-21 seq2 113 4e-20 seq4 111 1e-19 seq14 102 7e-17 seq11 93.3 4e-14 seq1 89.7 4e-13 seq17 86.0 5e-12 >seq15 Length=15134944 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | ||||| || | || || || || || || |||||||| | Sbjct 12612253 CCACCCCTCAAGCGAAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG-C 12612311 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | || |||| ||||||||||| || ||| |||||||||||||||||||||| || Sbjct 12612312 AAGTGTACGGCCGTCCTCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGATCCGGTGG 12612371 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || || || |||||| ||| | | || |||||||||| || ||||| Sbjct 12612372 GATACCTTCCTTGTCTTGAATCTTGGCTTTGACATTGTCAACAGTGTCTGAGGACTCAAC 12612431 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | |||||||||| |||||||| ||||| ||||| Sbjct 12612432 CTCGAGGGTTATTGTCTTGCCCGTCAAGGTTTTCACGAAGATCTGCAT 12612479 >seq12 Length=14929429 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||| || | ||||| || | || || || || || || |||||||| || Sbjct 11925737 CCACCCCTCAAGCGAAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCG 11925796 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| ||| |||| ||||||||||| || ||| |||||||||||||||| || || || Sbjct 11925797 AGTGT-GCGGCCGTCCTCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCTGGTGG 11925855 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || || || |||||| ||| | | || | || |||| || ||| || Sbjct 11925856 GATACCTTCCTTGTCTTGAATCTTGGCTTTGACATTGTCGATTGTATCTGAGGATTCTAC 11925915 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | |||||||||| |||||||| ||||| ||||| Sbjct 11925916 CTCGAGGGTTATTGTCTTGCCCGTCAAGGTTTTCACGAAGATCTGCAT 11925963 >seq2 Length=23562801 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | |||||| | ||||| || | || || || || || || |||||||| Sbjct 14982821 CCACCCCTCAACCGAAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCG 14982880 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || ||||||||||| || ||| |||||||||||||||| || || || Sbjct 14982881 AGCGTGCGGCCATCCTCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCTGGTGGG 14982940 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| ||| | | || | ||||||| || ||||| Sbjct 14982941 ATGCCCTCCTTGTCTTGAATCTTGGCTTTGACATTGTCGATCGTGTCTGAGGACTCAACC 14983000 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | || ||||||| |||||||| ||||| ||||| Sbjct 14983001 TCGAGGGTTATTGTCTTACCCGTCAAGGTTTTCACGAAGATCTGCAT 14983047 >seq4 Length=23188140 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || ||||||||||| ||| || | || | |||||||||||||| |||||| | Sbjct 1307348 TCCTTCTGAATATTGTAATCGGCCAAAGTCCGACCATCTTCGAGCTGTTTCCCGGCGAAG 1307407 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || | ||| ||||||||||| || | ||||| || || |||||| ||| | | | Sbjct 1307408 ATCAAACGTTGTTGATCCGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCTTTGACGTTG 1307467 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| || || || || || ||||||| ||||| |||| ||||||||| Sbjct 1307468 TCGATGGTGTCGCTGCTCTCCACCTCAAGGGTTATAGTCTTGCCGGTCAAAGTTTTCACG 1307527 Query 27237 AAGATTTGCAT 27247 ||||| ||||| Sbjct 1307528 AAGATCTGCAT 1307538 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| |||||||| ||||||||||| || | || | ||||||||||| || ||| Sbjct 1306886 GTAGACTCTTTTTGGATATTGTAGTCAGCCAGAGTCCGGCCATCTTCGAGCTGCTTTCCG 1306945 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | || |||||||| || || | ||||| || || |||||| || Sbjct 1306946 GCAAAGATCAAGCGTTGTTGATCAGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTG 1307005 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| || || || |||||||| || | || || |||| || Sbjct 1307006 ACGTTGTCGATGGTGTCGCTGCTCTCTACCTCTAGAGTAATGGTCTTCCCTGTCAAGGTC 1307065 Query 27231 TTCACAAAGATTTGCATAGCT 27251 |||||||| || |||||| || Sbjct 1307066 TTCACAAAAATCTGCATACCT 1307086 >seq14 Length=17716633 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| | | |||| |||| ||| Sbjct 8228924 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCG 8228983 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| || ||| |||||||||||||||| || || || | ||||| || || Sbjct 8228984 AGTTGTTTCCCAGCGAAAATGAGACGCTGTTGGTCTGGAGGGATGCCCTCCTTGTCCTGA 8229043 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | | || | ||||||| | ||||| || || ||||| | || Sbjct 8229044 ATCTTGGCTTTGACATTGTCGATTGTGTCTGATGACTCAACCTCGAGGGTTATGGTCTTT 8229103 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||| || ||||| ||||| ||||| Sbjct 8229104 CCCGTCAAGGTCTTCACGAAGATCTGCAT 8229132 >seq11 Length=18885544 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || ||||||||||| ||| || | || | ||||||||||| || || ||| | Sbjct 145324 TCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAAT 145265 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || ||||||||||||||||| || | || || || || |||||| || | | | Sbjct 145264 ATTAGACGCTGTTGATCCGGTGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTG 145205 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| || || || || ||||| || | ||||| || || |||||||| Sbjct 145204 TCGATGGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACG 145145 Query 27237 AAGATTTGCAT 27247 ||||| ||||| Sbjct 145144 AAGATCTGCAT 145134 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| || | || || || || || || ||||| || Sbjct 16429784 TGCCACCTCTCAAACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAG 16429725 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | || || ||||| || |||||| |||| || | ||| || || || | Sbjct 16429724 CAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGCCTCTGCTGGTCTGGTG 16429665 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | || | |||||||| | ||| | Sbjct 16429664 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAGCTTTCCA 16429605 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || ||||| || || ||||||||||| Sbjct 16429604 CCTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAGATTTGCAT 16429556 >seq1 Length=48367220 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | |||||||| | ||||| || || ||||| ||||||||| Sbjct 44860133 TGCCACCTCTCAATCGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGG 44860074 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | || || ||||| || || || |||| || | ||| || || || | Sbjct 44860073 CAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGTG 44860014 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | || | |||||| | | ||| | Sbjct 44860013 GGATCCCCTCCTTGTCCTGGATCTTGGCCTTTACATTATCAATAGTGTCAGAGCTTTCCA 44859954 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || ||||| || || ||||||||||| Sbjct 44859953 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 44859905 >seq17 Length=14661173 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | |||||||| | ||||| || || |||||||| ||||| Sbjct 1747435 CCACCGCGCAGACGGAGCACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGTCAGCA 1747376 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | ||||| |||||||| || || |||| | | || || ||||| || Sbjct 1747375 AGGGTCCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGG 1747316 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| | |||| | || | ||||| | ||||| Sbjct 1747315 ATCCCTTCCTTGTCCTGGATCTTTGTCTTCACATTGTCAATTGTGTCAGAACTCTCAACC 1747256 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| |||| ||||| || ||||| ||||||||||| ||||| Sbjct 1747255 TCCAAAGTGATAGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 1747209 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||||||| | || || ||||| |||||||||||||| Sbjct 1747891 CCACCACGCAGACGGAGCACCAAATGCAGAGTCGATTCTTTCTGAATATTGTAGTCTGCA 1747832 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || |||||||| || || |||| | | || || ||||| || Sbjct 1747831 AGGGTGCGACCATCCTCCAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGG 1747772 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| |||||| | || | | | || | ||| || | | || || Sbjct 1747771 ATCCCTTCCTTATCTTGGATCTTTGTCTTGACGTTATCAATAGTATCCGAGCTCTCCACC 1747712 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| ||| || || || ||||||||||| || ||||| Sbjct 1747711 TCCAAGGTGATAGTTTTTCCAGTGAGGGTTTTCACAAAAATCTGCAT 1747665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424921380275568