Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 seq14 107 2e-18 seq5 91.5 2e-13 seq17 89.7 6e-13 seq7 84.2 3e-11 >seq2 Length=23562801 Score = 118 bits (130), Expect = 1e-21 Identities = 278/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || |||| || | |||||||| | | ||||| Sbjct 19331115 TCAAGAATGTCTGCCCTGTTAGTTGCTGCAACGACAATGATGCCAGTATTACCCTCAAAA 19331056 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || || | || |||| || || ||||| ||||||||| || | Sbjct 19331055 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTTCCTCCGCCA 19330996 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| | | |||| | ||||| |||||||| ||||| | || ||||| || || Sbjct 19330995 ATTCCAGTTCCTCTTTGCCTTCCCACGGCATCAATTTCATCCACAAACACAATGCAAGGA 19330936 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| || ||| | | |||||||| || || | |||||| |||||||||||| Sbjct 19330935 GCATTCTCTTTGGCCTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAAAC 19330876 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGA 11780 ||||| ||||| | | | || | || || || || ||| | |||||| || | Sbjct 19330875 ATCTCAACAAACTCCGAACCTGA--AATGGAGAAAAACGGAACACCCGCTTCACCAGCAA 19330818 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || ||| || || ||||| || |||||||| || | ||||| | ||| | Sbjct 19330817 TTGCCTTGGCCAGAAGAGTCTTCCCAGTACCTGGAGGTCCAACAAGAAGAACACCTTTCG 19330758 Query 11841 GGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 | || || || | || | ||||||| || | ||||||||| ||||| | ||| Sbjct 19330757 GAATGCGAGCCCCTACTGCAGTAAATCTCTCAGGCTTCTTGAGAAACTCCACTACCTC 19330700 Score = 95.1 bits (104), Expect = 2e-14 Identities = 226/340 (66%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || |||| || | |||||||| | | ||||| Sbjct 19351730 TCAAGAATGTCTGCCCTGTTAGTTGCTGCAACGACAATGATGCCAGTATTACCCTCAAAA 19351671 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || || | || |||| || || ||||| ||||||||| || | Sbjct 19351670 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTTCCTCCGCCA 19351611 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| | | |||| | ||||| |||||||| ||||| | || ||||| || || Sbjct 19351610 ATTCCAGTTCCTCTTTGCCTTCCCACGGCATCAATTTCATCCACAAATACAATGCAAGGA 19351551 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA--- 11719 ||| || ||| | | |||||||| || || | |||||| ||||||||| Sbjct 19351550 ACATTCTCTTTGGCCTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACACCA 19351491 Query 11720 ---AACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCAC 11774 |||||||| ||||| | | | || | || || || || ||| | ||||| Sbjct 19351490 ACAAACATCTCAACAAACTCCGAACCTGA--AATGGAGAAAAACGGAACACCCGCTTCAC 19351433 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || || || ||| || || ||||| || |||||||| Sbjct 19351432 CAGCAATTGCCTTGGCCAGAAGAGTCTTCCCAGTACCTGG 19351393 Score = 93.3 bits (102), Expect = 5e-14 Identities = 192/284 (68%), Gaps = 14/284 (5%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | || |||||||| || || |||||||||||||| | Sbjct 702664 AAATCCATCCATTTCAGTCAACAACTGATTAATGGTCTGCTCTCTCTCATCATT--CCCC 702721 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | ||||| | | ||| | || ||||||||||| |||||||| |||||||| Sbjct 702722 CCTCCAAGTCCAGCCCCTCTCTGCCTCCCAACCGCATCAATTTCATCAATAAAGACAATG 702781 Query 11657 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 || || |||| ||| || | ||||| | ||| | || || || |||| Sbjct 702782 CAGGGCGCTTTTGACTTT-----GCTTTCTCAAACAAATCTCTCACTCTCGACGCCCCCA 702836 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATT 11771 | |||||||||| ||| ||||| | | ||| | |||| | ||| || || | | Sbjct 702837 CTCCAACAAACAACTCAACAAACTCCGAGGCTGCGCACGAAAAGAACGGCACCCCCGCCT 702896 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 | || || | |||| ||| | | ||||| || || |||||| Sbjct 702897 CTCCTGCCACAGCTCTGGCCAACAATGTCTTCCCAGTCCCTGGC 702940 >seq14 Length=17716633 Score = 107 bits (118), Expect = 2e-18 Identities = 280/424 (66%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 || || || ||| | | ||||| ||||||||||| | | |||||| | | ||||| Sbjct 9972247 TCGAGAATGTCCGCCCTGTTAGTTGCCGCAATAACAATGACGCCAGTATTACCCTCAAAA 9972188 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || || | || || | ||| || ||||| ||||| ||| || Sbjct 9972187 CCATCCATTTCTGTCAGAAGCTGGTTTAGTGTCTGCTCTCTTTCATCGTTTCCT------ 9972134 Query 11603 CCACC-AGCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 ||||| | ||| | |||| | ||||| |||||||| ||||| | || ||||| Sbjct 9972133 CCACCGATTCCTGTTCCTCTTTGCCTTCCCACAGCATCAATTTCATCCACAAATACAATG 9972074 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || ||| || ||| | | |||||||| || || || ||| || ||||| Sbjct 9972073 CAAGGAGCATTCTCTTTGGCCTTCTTGAAGAGATCCCGGACTCTAGAGGCTCCAACACCG 9972014 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCAC 11774 ||||||||||| ||||| | | | || | || || ||||| ||| | ||||| Sbjct 9972013 ACAAACATCTCAACAAACTCCGAACCTGA--AATGGAGAAAAATGGAACACCCGCTTCAC 9971956 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGC 11834 | || || || ||| || || || || || |||||||| || | ||||| ||| Sbjct 9971955 CAGCAATTGCCTTGGCCAGAAGAGTTTTCCCAGTACCTGGAGGCCCAACAAGAAGAACGC 9971896 Query 11835 CTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAA 11894 || || || || || | || ||||||| || | ||| ||||| ||||| | Sbjct 9971895 CTTTTGGAATGCGAGCCCCTACTGCAGTGAATCTCTCAGGCTTCTTAAGAAACTCCACTA 9971836 Query 11895 TCTC 11898 ||| Sbjct 9971835 CCTC 9971832 >seq5 Length=25802683 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| ||||| | || |||||||| || || |||||||| ||||| | Sbjct 24866497 AAATCCATCCATTTCGGTCAACAACTGATTAATAGTCTGCTCTCTCTCGTCATTCCCA-- 24866440 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | ||||| | | ||| | || || ||||||||||||||||| || ||||| Sbjct 24866439 CCTCCAAGTCCAGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATAAACACAATG 24866380 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || ||| | ||| | ||||| | ||| | || || || || || || Sbjct 24866379 CA-GGGTGCTTTCGACTTGGCTTTCTCAAACAAATCTCTCACTCTCGACGCTCCAACTCC 24866321 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 |||||||||||| ||||| | | ||| | ||| | ||| || || || || || Sbjct 24866320 AACAAACATCTCAACAAACTCCGAGGCTGCGCATGAAAAGAACGGCACCCCTGCCTCTCC 24866261 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 || | |||| || | | |||||||| || |||||| Sbjct 24866260 TGCCACAGCTCTAGCCAACAATGTCTTTCCAGTCCCTGGC 24866221 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || ||||||||||| ||||||||||| ||||| || | || ||| ||||| | || Sbjct 6278736 TGAGGTCTTGGTGTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGA 6278795 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||| || | | | |||||||| || || ||| || || | || Sbjct 6278796 GACATCAAATGGTACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCA 6278855 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA- 112119 |||| ||| | ||||| ||| || |||||| | | || | || | | || || Sbjct 6278856 ACCCTCATCAGCATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAG 6278915 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | |||| |||||||| |||| ||||||||| || | ||| ||||||| Sbjct 6278916 GATCTT-TCAAGGGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 6278962 >seq17 Length=14661173 Score = 89.7 bits (98), Expect = 6e-13 Identities = 273/412 (66%), Gaps = 24/412 (6%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || ||||||||||| | ||| || || |||||||||||| || Sbjct 12166479 AAAACCATCCATTTCAGTAAGTAATTGATTCAGTGTCTGCTCCCTCTCATCATTTCCT-- 12166536 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| || | | | ||| | || || ||||| |||||||| || || || || Sbjct 12166537 -CCACCAATTCCTGTCCCTCTCTGCCTCCCGACAGCATCTATCTCATCGATAAAAACTAT 12166595 Query 11656 ACATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||||| ||| ||||| || | | || | || | ||| ||| || || ||| Sbjct 12166596 GCATGG-TGA-GTTCGCCTTAGCCTTGTTGAACAAGTCCCTAACTCTTGAAGCCCCTACA 12166653 Query 11714 CCAACAAACATCTCCACAAAGTTTG----CGGCAGAGCACTGGATGAATGGGACATTTGA 11769 |||||||||||||| | ||| | || | ||||| | | ||| || || || Sbjct 12166654 CCAACAAACATCTCAATAAACTCTGATCCTGACAGAGAA----AAGAAAGGAACGCCTGC 12166709 Query 11770 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAG 11829 ||| || || || ||| || || | ||| ||||| || ||||| || | | || Sbjct 12166710 TTCTCCAGCTATTGCTTTAGCTAGCAAGGTTTTTCCAGTTCCTGGAGGTCCTACTAACAG 12166769 Query 11830 GGCGCCTCGGGGGATCTTGGCACC-ACTTC--CAAAATATCTCTCGGGTTGCTTGAGAAA 11886 | || || ||| | ||||| ||| | |||| | ||||| | ||| || | ||| Sbjct 12166770 AACTCCCTTAGGAATCCTTGCACCTACTGCAGCAAACT-TCTCTGGAGTT--TTTAAAAA 12166826 Query 11887 ATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 |||||||| |||| || || | || || |||||| || |||||||| Sbjct 12166827 TTCCACAATTTCTTGAAAATCTTGCTTTGCTTCGTCAACTCCAGCAACATCA 12166878 >seq7 Length=15101417 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || ||||| ||||| ||||||||||| ||||| || | || || ||||| | || Sbjct 5425801 TGGGGTCTAGGTGTTCCAGCATTGAAAAGGGTGGGAGAAGCATGTGTGAACCATCGCTGA 5425860 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | |||||| | | | |||||||| || || ||| || || | || Sbjct 5425861 GACATCAAATGGTATGTTTTGAGTGCCGAATCAATATCATCTTTGTGAATTCCAACAGCA 5425920 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA- 112119 |||| ||| | ||||| ||| || |||||| | | || | || | | || || Sbjct 5425921 ACCCTCATTAGCATGTGCTGGGGCCTTTCCACAACCTTCCCTTGGACCTTCAGCAGGTAG 5425980 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | |||| |||||||| |||| ||||||||| || | ||| ||||||| Sbjct 5425981 GATCTT-TCAAGGGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 5426027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628012264094400