Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq2 95.1 1e-14 >seq1 Length=48367220 Score = 118 bits (130), Expect = 1e-21 Identities = 376/570 (66%), Gaps = 21/570 (4%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCC 129784 ||| || || || | |||||||||||| ||||||||||| | |||| ||||| |||| Sbjct 31902863 ATACTCTCCGACTCTCTTCTCGAAGAAATTTGTCTTCCCTTGCAAG--GATATCAACTCC 31902920 Query 129785 ATAAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGA 129839 || |||||||||| || | ||| | || || | | ||| |||| | | Sbjct 31902921 ATCCAATCAAATGGATTAGCCACATTG---TACACCTTCCCG-CAC-CCAAGCGCACCCA 31902975 Query 129840 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGA 129899 || | ||| | || ||||||| |||| | |||| ||| ||||| || | | Sbjct 31902976 ACAGCCTATCAGCTACAAACTCAATATACTGACTCATCAACTCCCCATTCATCCCCACCA 31903035 Query 129900 GGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGA 129959 ||||| |||| ||||| | ||| || |||| || |||||||||||| ||| | Sbjct 31903036 ACGCGCATGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCACAGCTTCCTTCACTA 31903095 Query 129960 TGGCGTGAATGGTCTCCGTGC-CAGGTCTATTGCGCAA-AGTCTTGAAGAGTTCCACGGC 130017 | | | | | |||| | ||| | | || | ||| || || || | |||| Sbjct 31903096 TCCCCTTCACGCGCTCCTCACTCAGCT-TCTTCCTCAACAGGCTGTAAAGGAGACACGCG 31903154 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| || || || || || || || ||||| | || ||||||||| ||| ||||| Sbjct 31903155 AAA-TCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGG 31903213 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| || || || || || ||||| || ||||||||||| || ||||| || ||||| Sbjct 31903214 CATTAGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCC 31903273 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 ||||| || || || |||| | | ||| ||||| | | || | || | ||| Sbjct 31903274 TTCCACGCAAGCAAAAGCAATTAACCTCTCCGCAAA-ACTCTCGCCTCCG--TCGATCCA 31903330 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 | | ||||||| |||||| || | | |||||| || |||| || || | ||| || Sbjct 31903331 CCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAG 31903390 Query 130258 TTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 ||||| || | | ||| |||||||| Sbjct 31903391 GCGGTTCTTCTCAGTAGAATCCTTGATGTA 31903420 >seq2 Length=23562801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 247/369 (67%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | | | ||| |||||| || || | ||| || || || Sbjct 19331146 ATCAAACCGTCCTGGCCTCAACAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCTGC 19331087 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 | ||||| |||||| || | ||||| |||||||| || |||| || || || | Sbjct 19331086 AACGACAATGATGCCAGTATTACCCTCAAAACCATCCATTTCTGTCAGAAGCTGGTTAAG 19331027 Query 14185 GGTTTGTTCGCGTTCATCATT--CGCAGGCA-TACCACCCGCACTGCGTTGCTTACCGAC 14241 ||| || || | ||||||||| | | | || | ||| | || |||| | || || Sbjct 19331026 GGTCTGCTCTCTTTCATCATTTCCTCCGCCAATTCCAGTTCCTCT---TTGCCTTCCCAC 19330970 Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA--AAG 14299 ||| ||||||||||| | || || || || || ||| || ||| |||| ||| Sbjct 19330969 GGCATCAATTTCATCCACAAACACAATGCAAGGAGCATTCTCTTTGGC--CTTCTTGAAG 19330912 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 14359 | ||| || |||| |||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 19330911 AGATCCCGGACTCGAGAGGCACCAACACCAACAAACATCTCAACAAACTCCGAACCTGAA 19330852 Query 14360 CATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 14418 || | || || || || | |||||| || || || ||| || || |||||||| Sbjct 19330851 -ATGGAGAAAAACGGAACACCCGCTTCACCAGCAATTGCCTTGGCCAGAAGAGTCTTCCC 19330793 Query 14419 CGTCCCTGG 14427 || ||||| Sbjct 19330792 AGTACCTGG 19330784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618415765673840