Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 149 7e-31 seq14 120 4e-22 seq5 82.4 9e-11 >seq2 Length=23562801 Score = 149 bits (164), Expect = 7e-31 Identities = 286/415 (69%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || | ||||| || || || | | |||||| Sbjct 19331115 TCAAGAATGTCTGCCCTGTTAGTTGCTGCAACGACAATGATGCCAGTATTACCCTCAAAA 19331056 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||| ||| ||||||| || || || | ||||||||| || | Sbjct 19331055 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTTCCTCCGCCA 19330996 Query 9677 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736 |||| | | |||| |||||||||||||||| ||||| | || || ||||| || Sbjct 19330995 ATTCCAGTTCCTCTTTGCCTTCCCACGGCATCAATTTCATCCACAAACACAATGCAAGGA 19330936 Query 9737 TGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 9794 ||| || || |||| ||||||||||| || || ||| || |||||||||| Sbjct 19330935 GCATTCTCTTTGGC--CTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAA 19330878 Query 9795 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9853 ||||||| ||||| | | | ||| || | || || || ||| | |||||| ||| Sbjct 19330877 ACATCTCAACAAACTCCGAACCTGAA-ATGGAGAAAAACGGAACACCCGCTTCACCAGCA 19330819 Query 9854 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT 9913 || || ||| ||||||||||| || |||||||| || | || || ||||| Sbjct 19330818 ATTGCCTTGGCCAGAAGAGTCTTCCCAGTACCTGGAGGTCCAACAAGAAGAACACCTTTC 19330759 Query 9914 GGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||| | | ||| || | ||| |||||||||| | ||| ||||| ||||| Sbjct 19330758 GGAA--TGCGAGCCCCTACTGCAGTAAATCTCTCAGGCTTCTTGAGAAACTCCAC 19330706 Score = 131 bits (144), Expect = 2e-25 Identities = 283/419 (68%), Gaps = 12/419 (3%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || | ||||| || || || | | |||||| Sbjct 19351730 TCAAGAATGTCTGCCCTGTTAGTTGCTGCAACGACAATGATGCCAGTATTACCCTCAAAA 19351671 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||| ||| ||||||| || || || | ||||||||| || | Sbjct 19351670 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTTCCTCCGCCA 19351611 Query 9677 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736 |||| | | |||| |||||||||||||||| ||||| | || || ||||| || Sbjct 19351610 ATTCCAGTTCCTCTTTGCCTTCCCACGGCATCAATTTCATCCACAAATACAATGCAAGGA 19351551 Query 9737 TGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGG------CGCCCACAC 9788 ||| || || |||| ||||||||||| || || || | || |||| Sbjct 19351550 ACATTCTCTTTGGC--CTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAC 19351493 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 9847 ||||||||||||| ||||| | | | ||| || | || || || ||| | |||| Sbjct 19351492 CAACAAACATCTCAACAAACTCCGAACCTGAA-ATGGAGAAAAACGGAACACCCGCTTCA 19351434 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 || ||||| || ||| ||||||||||| || |||||||| || | || || || Sbjct 19351433 CCAGCAATTGCCTTGGCCAGAAGAGTCTTCCCAGTACCTGGAGGTCCAACAAGAAGAACA 19351374 Query 9908 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||| ||| | || || | || | |||||||||| | ||| ||||| ||||| Sbjct 19351373 CCTTTCGGAGTGCGAGCCCCTACTGCAGTGAATCTCTCAGGCTTCTTGAGAAACTCCAC 19351315 >seq14 Length=17716633 Score = 120 bits (132), Expect = 4e-22 Identities = 249/365 (68%), Gaps = 18/365 (5%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 |||||||||||||| ||||||| ||| ||||| | || || || | |||||| || || Sbjct 9972193 TCAAAACCATCCATTTCTGTCAGAAGCTGGTTTAGTGTCTGCTCTCTTTCATCGTTTCCT 9972134 Query 9671 GGCATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 9724 ||||| | ||| | |||| ||||||| |||||||| ||||| | || Sbjct 9972133 ------CCACCGATTCCTGTTCCTCTTTGCCTTCCCACAGCATCAATTTCATCCACAAAT 9972080 Query 9725 ACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGC 9782 || ||||| || ||| || || |||| ||||||||||| || | ||| | Sbjct 9972079 ACAATGCAAGGAGCATTCTCTTTGGC--CTTCTTGAAGAGATCCCGGACTCTAGAGGCTC 9972022 Query 9783 CCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTA 9841 | ||||| ||||||||||| ||||| | | | ||| || | || || || ||| Sbjct 9972021 CAACACCGACAAACATCTCAACAAACTCCGAACCTGAA-ATGGAGAAAAATGGAACACCC 9971963 Query 9842 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 9901 | |||||| ||||| || ||| |||||||| || || |||||||| || | || Sbjct 9971962 GCTTCACCAGCAATTGCCTTGGCCAGAAGAGTTTTCCCAGTACCTGGAGGCCCAACAAGA 9971903 Query 9902 AGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAA 9961 || | ||| |||||| || || | || | |||||||||| | ||||||||| Sbjct 9971902 AGAACGCCTTTTGGAATGCGAGCCCCTACTGCAGTGAATCTCTCAGGCTTCTTAAGAAAC 9971843 Query 9962 TCCAC 9966 ||||| Sbjct 9971842 TCCAC 9971838 >seq5 Length=25802683 Score = 82.4 bits (90), Expect = 9e-11 Identities = 178/260 (68%), Gaps = 16/260 (6%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTG--TTTCATTATCA 9613 |||||| | |||| | |||||| || || | |||| || ||||| || | | | | Sbjct 24866554 ATCAAGAACATCAGGTCTATTCGTAGCAGCCAATACAATAACACCTGAATTGCCTGA--A 24866497 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || ||||| | || |||||||| || || | || |||||| | | Sbjct 24866496 AATCCATCCATTTCGGTCAACAACTGATTAATAGTCTGCTCTCTCTCGTCATTCCCA--C 24866439 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | ||||| | | ||| | || || ||||||||||||||||| || || |||| Sbjct 24866438 CTCCAAGTCCAGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATAAACACAATGC 24866379 Query 9732 ATGGTTGATTTTCGCGA----GCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 | || || ||| ||| || ||||| | ||| | || | | || || || Sbjct 24866378 A-GGGTGCTTT---CGACTTGGCTTTCTCAAACAAATCTCTCACTCTCGACGCTCCAACT 24866323 Query 9788 CCAACAAACATCTCCACAAA 9807 |||||||||||||| ||||| Sbjct 24866322 CCAACAAACATCTCAACAAA 24866303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242471029360