Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq17 120 3e-22 seq1 114 1e-20 seq9 84.2 2e-11 >seq17 Length=14661173 Score = 120 bits (132), Expect = 3e-22 Identities = 310/465 (67%), Gaps = 12/465 (3%) Strand=Plus/Plus Query 59661 TGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCG 59720 ||||| || || | | ||||||| |||| |||||| ||||| ||||||||||| Sbjct 8256212 TGGGAAAACCTGACTCCCGACGAGAAGCACTTCATCTCTCATGTCCTTGCCTTCTTCGCC 8256271 Query 59721 GCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGA 59778 || |||||| ||||| | |||||| | | | | | |||| || || ||||| Sbjct 8256272 GCCTCTGATGGGATTGTCCTCGAAAATCTCGCCGGG--CGTTTCATGAAAGAGGTCCAAG 8256329 Query 59779 TTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAG 59837 | | ||||| || | || |||| | ||| ||| | ||| ||||||||| ||| Sbjct 8256330 TCTCGGAGGCGCGTGCTTTTTACGGATTCCAGATCGCG-ATTGAGAATATCCACTCAGAG 8256388 Query 59838 ACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTC 59897 | |||| || || | || | | |||||||| | || |||||| | ||||||| Sbjct 8256389 ATGTACAGTCTTCTGTTGGAGACTTATATCAAGGATTCTGAGGAGAAGAATCGTCTGTTT 8256448 Query 59898 CGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT- 59956 | ||| || || ||| || || | || ||| |||||| ||| |||||| Sbjct 8256449 CATGCTATCGAAACGGTGCCGTGTGTGGCTAAGAAGGCACGGTGGGCCTTGCGGTGGATT 8256508 Query 59957 GAGTCCTGGAGCATCATTTGCAC--AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATC 60014 || | ||||| | || | | | | || | |||||||| ||||||||||| || Sbjct 8256509 GA---CGGGAGCGAGAGTTTCGCGGAGAGGCTAGTTGCTTTTGCTTGCGTGGAAGGGATA 8256565 Query 60015 TTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGC 60074 || ||||| || || ||||| || || ||| | ||||||||||| | |||||||| Sbjct 8256566 TTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTAAAAAAGCGTGGGTTGATGCCGGGG 8256625 Query 60075 CTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 | | || || |||||| |||| || || || || || || ||| Sbjct 8256626 TTAACCTTTTCAAACGAGTTGATCTCGCGAGATGAAGGGCTTCAT 8256670 >seq1 Length=48367220 Score = 114 bits (126), Expect = 1e-20 Identities = 284/425 (67%), Gaps = 16/425 (4%) Strand=Plus/Minus Query 59703 GTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT 59762 ||||| ||||||||||| || ||||||||| || | || ||||| | | | | || Sbjct 31903579 GTCCTTGCCTTCTTCGCCGCCTCTGATGGAATCGTCCTCGAGAATATCGCCGGG--CGTT 31903522 Query 59763 TCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAAC 59819 || || || ||||| | | ||||| || | ||||||| || ||| ||| | Sbjct 31903521 TCATGAAAGAAGTCCAAGTCTCGGAGGCGCGTGCTTTCTACGGGTTCCAGATCGCG-ATT 31903463 Query 59820 GAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAA 59879 ||| ||||||||| |||| |||| || || | || | | |||||||| | Sbjct 31903462 GAGAATATCCACTCAGAGATGTACAGTCTTTTGTTGGAGACCTACATCAAGGATTCTACT 31903403 Query 59880 GAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAA 59939 |||||| | ||||| | |||||| |||||| || || | || || || Sbjct 31903402 GAGAAGAACCGCCTGTTTCATGCCATTGAGACGGTGCCGTGTGTGGCTAAGAAGGCGGAG 31903343 Query 59940 TGGGCCATGCAGTGGAT-----GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTT 59994 ||||| | | |||||| ||| | ||| | ||||| | | | || |||| Sbjct 31903342 TGGGCTTTACGGTGGATCGACGGAGGC---GAGAGT--TTTGCGGAGAGGTTAATTGCTT 31903288 Query 59995 TTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAA 60054 |||| ||||||||||| || || ||||| || || ||||| || || ||| | |||| Sbjct 31903287 TTGCTTGCGTGGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTAAAAA 31903228 Query 60055 AGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCC 60114 | ||||| || ||||| ||||||| ||||| |||||| |||| || || || || || | Sbjct 31903227 AACGTGGGCTAATGCCAGGCCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGGC 31903168 Query 60115 TCCAT 60119 | ||| Sbjct 31903167 TTCAT 31903163 >seq9 Length=12942059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 62/70 (89%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 55568 TGTCCGAGTTGGTCTAAGGAGGGAGACTTAAGATCTCCTGTGCGCAAGCACGCGTGGGTT 55627 || |||||| ||| ||||| || ||||||||||||| |||||| ||||||||||||||| Sbjct 11773659 TGCCCGAGT-GGT-TAAGGGGGAAGACTTAAGATCTTCTGTGCATAAGCACGCGTGGGTT 11773716 Query 55628 CGAACCCCAC 55637 |||||||||| Sbjct 11773717 CGAACCCCAC 11773726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548507562608160