Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq2514 544 1e-149 >seq2514 Length=157033 Score = 544 bits (602), Expect = 1e-149 Identities = 695/955 (73%), Gaps = 2/955 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 |||| |||| ||||||||||| | |||||||| | | | || || | | ||| Sbjct 1297 TTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTC-TGTA 1239 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || || || || |||||||| ||||| || Sbjct 1238 TTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTT 1179 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| ||||| || || || | | || | || Sbjct 1178 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG 1119 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| |||||||| |||||||| ||| | ||||| |||||| | ||| Sbjct 1118 GCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 1059 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 || || || || || | || |||| | |||||| | | ||| | | ||||||| Sbjct 1058 AACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 999 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || |||||||||||||| ||||||||| Sbjct 998 GGGCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 939 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | | |||||| ||||||||||| | Sbjct 938 TCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGT 879 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || || ||||| |||||||| || || || ||||| || ||||||||| |||||||||| Sbjct 878 TTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGTATTCCAG 819 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || || Sbjct 818 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 759 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | | || || ||| | | || || || Sbjct 758 GGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACC 699 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||| ||| || ||||| ||||| || || || Sbjct 698 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAAT 639 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || ||||| || || ||||| ||||| || | |||||||| |||||| ||| || ||| Sbjct 638 ATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTTAACAAC 579 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | || |||||| | || || | || || || | |||||||| ||||| Sbjct 578 TCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCT 519 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || |||| ||||| ||||| || || |||||||| |||||||| ||||| | Sbjct 518 TTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTT 459 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| ||||| |||||||||| ||||||||| Sbjct 458 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGT 399 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 |||||||||||||| || ||||||||||| || ||||| || ||||| ||||||| Sbjct 398 ATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 132 bits (146), Expect = 6e-26 Identities = 199/281 (71%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || | || ||| | | ||| ||||| Sbjct 121211 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCACATCGGAGCGTTTCCGCGGTCG 121152 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || || || || ||||| || ||||| | ||||| ||||| Sbjct 121151 AATCCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTAT 121092 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACAGACAAAGAAGAAAGAACTTAGA 19472 || |||| || || ||||||| || ||| || | | || ||||| | | Sbjct 121091 AGATTTACCTGTTGTTGATTGGGAATTGGAAACTAATATTCGAA--AGAAACGATTGCTT 121034 Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532 ||||| || || || ||| ||||| || || || ||||| || |||||||| ||| Sbjct 121033 AATTACAGTATTGATTTCGGAATCTGTATATTTTGTGGCAACTGTGTTGAGTATTGTCCA 120974 Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTAC 19573 || || ||| |||| ||||| |||||||||||| | |||| Sbjct 120973 ACTAATTGTTTATCAATGACTGAAGAATATGAACTTTCTAC 120933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603475435188480