Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq17 96.9 2e-15 seq1 91.5 1e-13 seq7 87.8 1e-12 seq6 84.2 2e-11 >seq17 Length=14661173 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || ||||| ||| ||| || | || || || ||| | Sbjct 1747665 ATGCAGATTTTTGTGAAAACCCTCACTGGAAAAACTATCACCTTGGAGGTGGAGAGCTCG 1747724 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | || ||||| ||| || || || ||||| | || ||| | Sbjct 1747725 GATACTATTGATAA--CGTCAAGACAAAGATCCAAGATAAGGAAGGGATCCCACCGGACC 1747782 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| |||||||| |||| || | |||| | | | || |||| Sbjct 1747783 AGCAAAGGTTGATTTTTGCTGGAAAACAGCTGGAGGATGGTCGCACCCTTGCAGACTACA 1747842 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || ||||| ||| |||||||||| | ||| ||||||| || Sbjct 1747843 ATATTCAGAAAGAATCGACTCTGCATTTGGTGCTCCGTCTGCGTGGTGG 1747891 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||||||||| ||||| || || || | || || |||||| | Sbjct 4943505 ATGCAGATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 4943446 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || ||| || || ||||| ||||| |||| || | Sbjct 4943445 GACACAATCGACAAT--GTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCCCCAGATC 4943388 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || ||||| || || ||| | || || | ||||| | | || |||| Sbjct 4943387 AGCAAAGGTTGATCTTTGCTGGGAAGCAACTAGAGGATGGACGCACACTCGCTGACTACA 4943328 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||| || ||| ||| | || ||||| Sbjct 4943327 ACATCCAGAAGGAGTCCACCCTCCACTTGGT 4943297 >seq1 Length=48367220 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||||||||||| || || || |||| || |||||| | Sbjct 25980784 ATGCAAATCTTTGTGAAAACTCTTACTGGTAAGACCATCACTCTTGAGGTTGAAAGCTCA 25980725 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| |||||| || || || || ||||| | || || | Sbjct 25980724 GACACCATTGATAAT--GTCAAAGCTAAGATCCAGGATAAGGAAGGGATCCCCCCAGATC 25980667 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 ||||| |||| |||||||| || |||||| | || || | ||||| |||| | ||||| Sbjct 25980666 AGCAAAGGTTGATTTTTGCTGGCAAACAACTTGAGGATGGACGCACTCTTG-CTGATTAT 25980608 Query 27967 AACATCCAAAAAGAG 27981 ||||| || |||||| Sbjct 25980607 AACATTCAGAAAGAG 25980593 >seq7 Length=15101417 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||||||||| ||||| || || || |||| || |||||| | Sbjct 1459120 ATGCAAATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCG 1459061 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| || || || || ||||| | || || | Sbjct 1459060 GATACTATTGATAAT--GTGAAAGCCAAGATCCAGGATAAGGAAGGGATCCCCCCAGATC 1459003 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || ||||| | || || | ||| | | | | ||||| | Sbjct 1459002 AGCAGAGGTTGATCTTTGCTGGCAAACAGCTTGAGGATGGACGAACCCTTGCTGATTATA 1458943 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || |||| | || |||||| | |||||| | || || Sbjct 1458942 ACATCCAAAAGGAATCCACTCTCCACTTGGTTCTACGTTTGAGAGGTGG 1458894 >seq6 Length=26894541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| || || || ||| || || |||| ||||| | | Sbjct 10380194 ATGCAGATCTTCGTGAAAACCCTGACAGGCAAAACCATAACTCTTGAAGTCGAGAATTCT 10380253 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| |||||| ||||| |||||||||||| | || | Sbjct 10380254 GA-----TACAATCGACAACGTCAAAGTCAAAATCCAAGACAAAGAAGGTATCCCTCCTG 10380308 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| | ||||| || || |||||| | || |||| || | | | |||||| Sbjct 10380309 ATCAGCAACGCCTGATTTTCGCTGGCAAACAACTCGAGGACGGCCGTACCCTTGCCGATT 10380368 Query 27965 ACAACATCCAAAAAGA 27980 ||||||||||||| || Sbjct 10380369 ACAACATCCAAAAGGA 10380384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355851496598478