Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq7 100 2e-16 seq11 96.9 3e-15 seq1 87.8 2e-12 seq4 84.2 2e-11 seq16 82.4 7e-11 >seq7 Length=15101417 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || |||| ||||| || || ||| || ||||| || |||||||| ||| Sbjct 1458894 CCACCTCTCAAACGTAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCA 1458953 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||||| | || |||||||||||||| ||||| || | | |||||| || | ||| Sbjct 1458954 AGGGTTCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGGG 1459013 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | | || || ||| ||| || ||| | | | | ||||| ||| ||| Sbjct 1459014 ATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTATCAATAGTATCCGAGCT---TTCC 1459070 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || | ||||| | || || || || ||||| ||||| |||||||||| Sbjct 1459071 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCATCT 1459122 >seq11 Length=18885544 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || | || || | |||||| || || ||| ||| || || || || ||||| Sbjct 16430014 CATGCCACCACGTAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATC 16429955 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || || | || |||||||| || || ||||| || | | ||||||||| | Sbjct 16429954 AGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCTGG 16429895 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || || |||||| ||| || |||| | | | ||||| ||| Sbjct 16429894 GGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTATCAGAACTCTC 16429835 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| ||||| | ||||| || || || ||||||||||||||||| Sbjct 16429834 CACCTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTAACAAAGATTTGCAT 16429784 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 |||||| || | || || || |||||| || ||||||||||| || | || | | | Sbjct 145805 GCGTAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATCAGCCAAAGTCCTTCC 145746 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187 || || | ||| || || ||||| || || | ||||||| ||||||| | | ||| | Sbjct 145745 ATCCTCCAACTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCCGGTGGG-ATCCCCTCCT 145687 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 ||||| || ||| |||| ||| | | | || ||||| |||||| |||| ||| Sbjct 145686 TGTCCTGAATCTTCGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTA 145628 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||| | ||||| || || || || ||||| || |||||| Sbjct 145627 ATAGTCTTTCCGGTTAGGGTCTTCACAAAAATCTGCATC 145589 >seq1 Length=48367220 Score = 87.8 bits (96), Expect = 2e-12 Identities = 169/247 (68%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| | || | ||||| || || ||| || |||| Sbjct 25980087 ACAAAAATTTG--CATACCACCTCTAAGTCGAAGCACCAGGTGGAGTGTGGATTCCTTTT 25980144 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || ||||| || || || || ||| | || || || || ||||| ||||| || || | Sbjct 25980145 GAATGTTATAGTCAGCTAGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATGAGCC 25980204 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||| ||||| | ||| | || ||| |||||| |||||| ||| | | | | | Sbjct 25980205 TCTGTTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTAGCTTTCACGTTATCAATAG 25980264 Query 39221 TATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 | || |||| || || |||| ||||| | ||||| |||| || |||||||||| Sbjct 25980265 TGTCAGAGCTC---TCAACCTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTAACAAAGA 25980321 Query 39278 TTTGCAT 39284 | ||||| Sbjct 25980322 TCTGCAT 25980328 >seq4 Length=23188140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || ||||||||||| || | |||| | | || || | ||| || || ||||| Sbjct 1306663 CTCTTTCTGGATATTATAATCCGCCAAGGTTCTTCCATCCTCCAACTGCTTCCCGGCAAA 1306722 Query 39153 TATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || |||||||| || | ||||||| | | ||| |||||| |||||| |||| || Sbjct 1306723 GATCAGACGCTGTTGATCCGGTGGG-ATTCCCTCCTTGTCCTGGATTTTTGCCTTGA-CG 1306780 Query 39212 TCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | | || ||||| |||||| |||| || || | || || |||| || || Sbjct 1306781 TTGTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTAATCGTCTTCCCTGTCAAGGTCTTC 1306840 Query 39271 ACAAAGATTTGCAT 39284 ||||| || ||||| Sbjct 1306841 ACAAAAATCTGCAT 1306854 >seq16 Length=14134809 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| || | ||||| ||| || || ||| ||||| ||||||||||| ||| Sbjct 6733542 CCTCCTCTTAAACGCAGCACCAGATGAAGAGTAGACTCCTTTTGAATATTATAATCAGCA 6733601 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC 39170 || || | | | || || ||||| || || ||||| || || | |||||| || Sbjct 6733602 AGGGTCCTTCCATCTTCTAGCTGCTTCCCTGCAAAGATTAGCCTCTGCTGATC 6733654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429532438991282