Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq17 163 2e-35 >seq17 Length=14661173 Score = 163 bits (180), Expect = 2e-35 Identities = 566/871 (65%), Gaps = 19/871 (2%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||| || || ||||| || |||||||||||||| || |||| || || || Sbjct 8256975 TTTTGATACTCTCCTACTCTTTTCTCGAAGAAATTAGTCTTCCCTTGCAAAGATATCAAC 8256916 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| |||| || ||||||| | ||||| || | ||| || || | | | Sbjct 8256915 TCCATCCAATCGAATGGATTAGCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAAC 8256856 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | | |||||||| || || |||||||| ||||| | || | ||| || || | || Sbjct 8256855 AGCCTATCAGCTACGAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCTACCAA- 8256797 Query 4437 CTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | | || || ||||||| || |||||| || ||| || || || | | ||| Sbjct 8256796 CGCGCATGGCAGCGCGTCCACCACAAACTCCCTCTCAATATCCACTGCATCCTTCACTAT 8256737 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA-----CAC 4550 | || | || || | | | || || || || ||| | || | ||| Sbjct 8256736 CCCCTTCACTTGCTCCTCACTCAGCTTCTTC-CTCAG----CAAGCTGTAGAGAAGGCAC 8256682 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCC 4609 || ||||||||||| | ||||| |||| || | |||| ||||| ||||| ||||| || Sbjct 8256681 GCGAAATCACAATGAAGCCCTTCATCTC-GCGAGATCAACTCGTTTGAAAAGGTTAACCC 8256623 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 ||||| || || | |||||| | ||||||||| || ||| ||| || || ||||| Sbjct 8256622 CGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATAT 8256563 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAAT 4729 ||||| ||| ||||| || |||| | | |||| || ||| | | ||| Sbjct 8256562 CCCTTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACT-CTCGCTCC--CGTCAAT 8256506 Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||| || ||||| || || || || ||||| | || | ||||| | ||| Sbjct 8256505 CCACCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAA 8256446 Query 4790 TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 | | | || || | || | |||||||| || | || || || ||||| || Sbjct 8256445 CAGACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTC 8256386 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCTGTTACTT 4908 || || ||||| || || || ||||| ||||||| ||||||| | || || | |||| Sbjct 8256385 TGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCA-CGCGCCTCCGAGACTT 8256327 Query 4909 GAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 | || || || || | | | | |||||| || || || ||| ||| || | Sbjct 8256326 GGACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGA 8256267 Query 4969 AAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGG 5028 | || || | |||||||| || |||| || ||||| || | || |||| ||||||| Sbjct 8256266 AGAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGC 8256207 Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGT 5088 | | ||| | | ||| || || ||| |||||||||| || || || ||||| |||| Sbjct 8256206 GGATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGT 8256147 Query 5089 ACATAGACCAAATATCAGGATACTGAATCGG 5119 |||| ||| || || |||||||| || Sbjct 8256146 ACATCTCCCAGATTGATGGGTACTGAATGGG 8256116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427036515467162