Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 251 1e-61 seq17 214 2e-50 seq7 120 4e-22 seq5 120 4e-22 >seq1 Length=48367220 Score = 251 bits (278), Expect = 1e-61 Identities = 607/915 (66%), Gaps = 8/915 (1%) Strand=Plus/Plus Query 47834 AGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCC 47893 |||||||||| |||||||| || || || | |||||||| ||||| || || || Sbjct 31902842 AGACATAACTGAAGCCTTTTGATACTCTCCGACTCTCTTCTCGAAGAAATTTGTCTTCCC 31902901 Query 47894 TTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAA 47953 || ||| ||||| ||||| |||||||||||||| | |||| || | || | Sbjct 31902902 TTGCAAGGATATCAACTCCATCCAATCAAATGGATTAGCCACATTGTACACCTTCCCGCA 31902961 Query 47954 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACA 48013 || | | | ||| ||||| || || || || ||||| |||||| || | Sbjct 31902962 CCCAAGCGCACCCAACAGCCTATCAGCTACAAACTCAATATACTGACTCATCAACTCCCC 31903021 Query 48014 ATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGAC 48073 |||||| || | | |||||| | ||| | |||||| || ||| || Sbjct 31903022 ATTCATCCCCACCAACGCGCATGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCAC 31903081 Query 48074 AGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAA 48133 ||| ||| | |||| | || |||||||| | | | ||| | | | Sbjct 31903082 AGCTTCCTTCACTATCCCCTTCACGCGCTCCTCACTCAGCTTCTTCCTCAACAGGCTGTA 31903141 Query 48134 CATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAA 48193 | | ||| || |||||||||||||| |||||||||| || || ||||| || || Sbjct 31903142 AAGGAGACACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAA 31903201 Query 48194 TGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGA 48253 || || || |||||||| ||||||||||| | ||||||||| || ||| || || Sbjct 31903202 GGTCAGGCCTGGCATTAGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGA 31903261 Query 48254 AAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT---GGCTTC 48310 || ||||| ||||| ||| ||||| || | | ||||| | |||| | || | Sbjct 31903262 GAAAAATATCCCTTCCACGCAAGCAAAAGCAATTAACCTCTCCGCAAAACTCTCGCCTCC 31903321 Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 || | ||||||||| ||||| || |||||||| ||||| |||| || || || Sbjct 31903322 GTCG---ATCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAAT 31903378 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 |||| ||| || ||| || ||| | ||| || | ||| || || | |||||||| Sbjct 31903379 GGCATGAAACAGGCGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACT 31903438 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 ||||| || ||||| ||||| ||||| || ||||| || ||||| ||| | ||| || Sbjct 31903439 GTACATCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTC 31903498 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 | || || || || | || || | || | |||||| || ||||||||| Sbjct 31903499 CGAGACTTGGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGA 31903558 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT 48610 || || || || || | || || ||| || | ||| |||| | |||||| || | Sbjct 31903559 GGCGGCGAAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTC 31903618 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||||| | || |||| || | ||| || |||||||| ||||||||||| || || || Sbjct 31903619 CCAGTGACCGACATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCAGC 31903678 Query 48671 TTTTTTATACATATTCCATATATCACTG-TATTGGATTGGGAAAATAACAAATCTATTTG 48729 ||| || ||||| | ||| || | | | ||||| |||||||| ||| || | | || Sbjct 31903679 TTTCTTGTACATCTCCCAGAT-TGATGGATATTGAATTGGGAACATACAGAAGCGGTCTG 31903737 Query 48730 GATTTTTTGCAAGGA 48744 | |||| || |||| Sbjct 31903738 GGTTTTCAGCGAGGA 31903752 >seq17 Length=14661173 Score = 214 bits (236), Expect = 2e-50 Identities = 567/862 (66%), Gaps = 8/862 (1%) Strand=Plus/Minus Query 47834 AGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCC 47893 |||||||||| |||||||| || || || | ||||||||| |||||||| || || Sbjct 8256991 AGACATAACTGAGGCCTTTTGATACTCTCCTACTCTTTTCTCGAAGAAATTAGTCTTCCC 8256932 Query 47894 TTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAA 47953 || ||| ||||| ||||| |||| ||||||||| | |||| || | || | Sbjct 8256931 TTGCAAAGATATCAACTCCATCCAATCGAATGGATTAGCCACATTGTACACCTTCCCGCA 8256872 Query 47954 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACA 48013 || | | | ||| ||||| || ||||| || ||||| |||||| || | Sbjct 8256871 CCCAAGCGCACCCAACAGCCTATCAGCTACGAACTCAATATACTGACTCATCAACTCCCC 8256812 Query 48014 ATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGAC 48073 ||||| |||| | ||| || || ||| | |||||| || ||| || Sbjct 8256811 GTTCATCCCTACCAACGCGCATGGCAGCGCGTCCACCACAAACTCCCTCTCAATATCCAC 8256752 Query 48074 AGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACA--AATGTTTA 48131 |||||| | |||| | || |||||||| | | | || || | || Sbjct 8256751 TGCATCCTTCACTATCCCCTTCACTTGCTCCTCACTCAGCTTCTTCCTCAGCAAGCTGTA 8256692 Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 | | | || || |||||||||||||| |||||||||| || || ||||| ||| Sbjct 8256691 GAGA--AGGCACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAA 8256634 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || | || ||||| | ||||| ||||| | ||||||||| || ||| || Sbjct 8256633 AAGGTTAACCCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCC 8256574 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG--GCTT 48309 || || ||||| ||||| ||| ||||| || || ||||| || |||| ||| Sbjct 8256573 GAGAAAAATATCCCTTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACTCTCGCTC 8256514 Query 48310 CGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369 | || |||||||| ||||| |||||||| ||||| |||| ||||| | Sbjct 8256513 CC--GTCAATCCACCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGA 8256456 Query 48370 TAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGAC 48429 |||||| ||| ||| || || || | ||| || | ||||| || | | ||||| Sbjct 8256455 TAGCATGAAACAGACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGAC 8256396 Query 48430 TATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTT 48489 | ||||| || ||||| ||||| ||||| || ||||| |||||||||||| | ||| | Sbjct 8256395 TGTACATCTCTGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCT 8256336 Query 48490 CTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCAC 48549 | | || || ||||| | || || | || | ||| || || || |||||| Sbjct 8256335 CCGAGACTTGGACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAG 8256276 Query 48550 TAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTAT 48609 || || || || || | ||||| || || | || |||| || |||||| || | Sbjct 8256275 AGGCGGCGAAGAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTT 8256216 Query 48610 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTG 48669 ||||| |||||| || | ||| || || ||||| |||||||| || ||||| | Sbjct 8256215 CCCAGTGGCGGATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAG 8256156 Query 48670 CTTTTTTATACATATTCCATAT 48691 |||| || ||||| | ||| || Sbjct 8256155 CTTTCTTGTACATCTCCCAGAT 8256134 >seq7 Length=15101417 Score = 120 bits (132), Expect = 4e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | ||| | || | ||||||||||| ||| || Sbjct 5425449 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCCA 5425508 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||||||||||||| | || || || || || ||| Sbjct 5425509 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGAT 5425568 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || ||| || | ||| || ||||||||||| || || Sbjct 5425569 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATATT 5425628 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 5425629 CCTTCAATACTATCATCTTTCATG 5425652 >seq5 Length=25802683 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||| |||||||| || ||||||||| | ||||||| |||| |||| || Sbjct 20778377 CTCTCTTTCATACTGAGTATACAGTTTTTCAAATTCTTGTCCCCAACAATCAGCCAAACC 20778318 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || ||| | ||||| | ||| ||||| | |||| | ||||| || ||| || Sbjct 20778317 TGGAGCCTCACTAGGGCAAAACAAAGACCATTTGTCATCACCTCGAACTCTTTCCATGAA 20778258 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| ||||| ||||||| |||| ||||| | || ||||||||| Sbjct 20778257 GAGATCAGGAATCCAAAGAGCAAGGAATAAGTCTCGAGCTCGATGTTCTTC 20778207 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | ||| | || ||||||||||||| ||| || Sbjct 6278371 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAATGCCA 6278430 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||| ||| ||||||||||||| | || || || || ||| Sbjct 6278431 TTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGAT 6278490 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||||||||| ||| || | ||| || ||||||||||| || || Sbjct 6278491 ACACCGATTCCTCCTGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATATT 6278550 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 6278551 CCTTCAATACTATCATCTTTCATG 6278574 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 77900 TCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGG 77959 |||||||||| | || ||||| ||||| || | |||||| ||| |||| || || Sbjct 6277893 TCTTTCATATCGGGTGTATAGTTCCTCAAACTCTTTGCCCCAACAATCTGCCAAACCTGG 6277952 Query 77960 GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAAAGA 78018 ||||| ||||| | ||||||||| | || | | | || ||||| | |||||||| Sbjct 6277953 AGCCTCATTAGGGCAAAACAATGACCATTGCCCGT-TGCTTTGAACTCTCTCCATAAAGA 6278011 Query 78019 GATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTT 78071 ||||||| | ||| |||||| |||| |||||| | | | |||||| ||| Sbjct 6278012 GATCAGGAACCCACAGAGCATAGAATAAATCTCGAGCACGGTTTTCTTCCTTT 6278064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694646970032960