Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq17 219 6e-52 seq1 203 5e-47 seq7 152 7e-32 seq5 147 3e-30 >seq17 Length=14661173 Score = 219 bits (242), Expect = 6e-52 Identities = 556/844 (66%), Gaps = 4/844 (0%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 ||||| || || ||||| | ||||||||| |||||||| || |||| ||| ||||| Sbjct 8256975 TTTTGATACTCTCCTACTCTTTTCTCGAAGAAATTAGTCTTCCCTTGCAAAGATATCAAC 8256916 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| |||| || ||||||| ||||| || | || | || | | | | Sbjct 8256915 TCCATCCAATCGAATGGATTAGCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAAC 8256856 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || ||||| || ||||| || |||||| |||||| || | ||||| |||| | Sbjct 8256855 AGCCTATCAGCTACGAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCTACCAAC 8256796 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | || || || ||| | |||||| |||||| || |||||| | |||| Sbjct 8256795 GCGCATGGCAGCGCGTCCACCACAAACTCCCTCTCAATATCCACTGCATCCTTCACTATC 8256736 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCA--AATGTTTAAACATTAAACATGCAA 46636 | ||| |||||||| | | | ||| || | || | | | || || | Sbjct 8256735 CCCTTCACTTGCTCCTCACTCAGCTTCTTCCTCAGCAAGCTGTAGAGA--AGGCACGCGA 8256678 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 ||||||||||||| |||||||||| || || ||||| ||||| || | ||| |||| Sbjct 8256677 AATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAACCCCGGCA 8256618 Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTT 46756 | | ||||||||||| | ||||||||| || ||| || || || ||||| |||| Sbjct 8256617 TCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTT 8256558 Query 46757 CTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTTT 46816 | || || || || || || ||||| || |||| | | |||||||| Sbjct 8256557 CCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACTCTCGCTCCCGTCAATCCACCGCA 8256498 Query 46817 GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 46876 ||||| ||||| || ||||| |||| ||||| ||||||| ||| ||| | Sbjct 8256497 AGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAACAGACGAT 8256438 Query 46877 ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAA 46936 | || || ||| ||| || | ||| || || | | |||||| ||||| ||||| || | Sbjct 8256437 TCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCTGAGTGGA 8256378 Query 46937 TGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTG 46996 | || ||||| || ||||| |||||||||||| | || || | | || |||||| Sbjct 8256377 TATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGGACCTCTT 8256318 Query 46997 TACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCA 47056 | || || | | | ||| || || || |||||| || || || || || | Sbjct 8256317 TCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAGAAGGCAA 8256258 Query 47057 ATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTT 47116 ||||| || || | || || |||| |||||| || | ||||| |||||| Sbjct 8256257 GGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCGGATATCCG 8256198 Query 47117 TTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCC 47176 || | ||| || || ||||| ||||| || || ||||| ||||| || ||||| | || Sbjct 8256197 ACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTCCC 8256138 Query 47177 ATAT 47180 | || Sbjct 8256137 AGAT 8256134 >seq1 Length=48367220 Score = 203 bits (224), Expect = 5e-47 Identities = 565/867 (65%), Gaps = 0/867 (0%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 ||||| || || || || | |||||||| ||||| || || |||| ||| ||||| Sbjct 31902858 TTTTGATACTCTCCGACTCTCTTCTCGAAGAAATTTGTCTTCCCTTGCAAGGATATCAAC 31902917 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||| ||||||| ||||| || | || | || | | | | Sbjct 31902918 TCCATCCAATCAAATGGATTAGCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAAC 31902977 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || ||||| || || || || |||||| |||||| || | |||||| || | | Sbjct 31902978 AGCCTATCAGCTACAAACTCAATATACTGACTCATCAACTCCCCATTCATCCCCACCAAC 31903037 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | ||||| | ||| | |||||| || ||| ||||| ||| | |||| Sbjct 31903038 GCGCATGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCACAGCTTCCTTCACTATC 31903097 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | || |||||||| | | | |||| | | | | | ||| || ||| Sbjct 31903098 CCCTTCACGCGCTCCTCACTCAGCTTCTTCCTCAACAGGCTGTAAAGGAGACACGCGAAA 31903157 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 ||||||||||| |||||||||| || || ||||| || || || || || |||||| Sbjct 31903158 TCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGGCATT 31903217 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 || ||||| ||||| | ||||||||| || ||| || || || ||||| ||||| Sbjct 31903218 AGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCC 31903277 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTTTGA 46818 || || || || | | ||||| | |||| | | | ||||||| | | Sbjct 31903278 ACGCAAGCAAAAGCAATTAACCTCTCCGCAAAACTCTCGCCTCCGTCGATCCACCGTAAA 31903337 Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 ||||| || ||||| || ||||| |||| || || || |||| ||| || ||| Sbjct 31903338 GCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGGCGGTTC 31903397 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 || ||| | ||| || | || || || | |||||||| ||||| ||||| || || Sbjct 31903398 TTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCTGAGTGGATA 31903457 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 || ||||| || ||||| || ||||| ||| | || || | | || || ||| | Sbjct 31903458 TTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGGACTTCTTTC 31903517 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 || || | | | |||||| || ||||||||| || || || || || | Sbjct 31903518 ATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCGGCGAAGAAGGCAAGG 31903577 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTT 47118 || || ||| || | ||| || || | |||||| || | ||||| | || |||| Sbjct 31903578 ACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACCGACATCTGAA 31903637 Query 47119 GATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCAT 47178 || | ||| || |||||||| ||||| ||||| || || ||||| || ||||| | ||| Sbjct 31903638 GAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCAGCTTTCTTGTACATCTCCCAG 31903697 Query 47179 ATATCACGATATTGGATCGGAAAAATA 47205 || ||||||| || || || ||| Sbjct 31903698 ATTGATGGATATTGAATTGGGAACATA 31903724 >seq7 Length=15101417 Score = 152 bits (168), Expect = 7e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | ||| | || | ||||||||||| |||||| Sbjct 5425449 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCCA 5425508 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||||||| ||||||||||||| ||||| || || || |||| Sbjct 5425509 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGAT 5425568 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || |||| ||| | |||||| |||||||| ||||| || Sbjct 5425569 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATATT 5425628 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 5425629 CCTTCAATACTATCATCTTTCATG 5425652 >seq5 Length=25802683 Score = 147 bits (162), Expect = 3e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | ||| | || ||||||||||||| |||||| Sbjct 6278371 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAATGCCA 6278430 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| ||| ||||||||||||| ||||| || || |||| Sbjct 6278431 TTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGAT 6278490 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||||||||| |||| ||| | |||||| |||||||| ||||| || Sbjct 6278491 ACACCGATTCCTCCTGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATATT 6278550 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 6278551 CCTTCAATACTATCATCTTTCATG 6278574 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| || ||||| | ||||||||| | ||||||| |||| ||||||| Sbjct 20778377 CTCTCTTTCATACTGAGTATACAGTTTTTCAAATTCTTGTCCCCAACAATCAGCCAAACC 20778318 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||| | || || | ||| ||||| | |||| | ||| | || ||| || Sbjct 20778317 TGGAGCCTCACTAGGGCAAAACAAAGACCATTTGTCATCACCTCGAACTCTTTCCATGAA 20778258 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| ||||| ||||||| |||| ||||| | || | ||||||| Sbjct 20778257 GAGATCAGGAATCCAAAGAGCAAGGAATAAGTCTCGAGCTCGATGTTCTTC 20778207 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || ||||| |||||||||||||| | ||| | | || | Sbjct 6278748 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAAATGG 6278807 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| ||| ||| || ||||| || |||||||| ||||| || | ||||| | Sbjct 6278808 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 6278867 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || |||||||| | ||| ||| ||| | | |||| | ||| ||| |||| | Sbjct 6278868 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAGGATCTTTCAAGG 6278927 Query 77174 GTTTTAAAACCAAAATA 77190 || || || ||||| || Sbjct 6278928 GTCTTGAAGCCAAAGTA 6278944 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 76981 TTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTC 77040 |||| | || |||| |||||||| || | ||||| | |||||||||||||| ||| Sbjct 20777404 TTGAGGCTGGGCAGTCCCTGCATTGAAAAGGGTAGGGGTAGCATGAGTGAACCAACTTTG 20777345 Query 77041 AGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGC 77100 ||| | || | || |||| | | | ||| || || || || || || ||||| Sbjct 20777344 AGACATTAAGTGATAAGTTTTGGTGGCAGATTCAATGTCATCTTTGTGGATACCAACAGC 20777285 Query 77101 GACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTA 77160 || | ||||| | ||||| |||| ||||||| |||| || | ||||| | ||| Sbjct 20777284 CACTCTCATCAGTAGGTGCTGTGGTCTTTCTACAATCTTTCCATCAACCTTCAAAAGGTA 20777225 Query 77161 TGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 77214 || | || | |||||| || |||||||| | ||| ||| || || || || Sbjct 20777224 GGACCTCTCAAGAGTTTTGAAGCCAAAATAATCATATTCAAAATCCCTGTCATA 20777171 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||||| || | |||| | ||| |||| || || Sbjct 20777744 CCTCCTTGATCAACATAGCGAGCAGTGTTGTTGAACACTCGAAGCATGGGAACTATACCA 20777685 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || ||||||||||| || ||| ||||| || || | |||||| || || Sbjct 20777684 TTGGAAGTACCATTTGTCCCCCGAATGTAACTGCCTGTGGCGTGGATATTATGAACAGCA 20777625 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || | ||| || | |||||| |||| || ||||| ||| Sbjct 20777624 ATACCAATTCCTCCAGCTAATTTGCTAATAACAGCACACTCCTTCAGAGTATCATATATG 20777565 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || || || ||||| ||||| || ||||| || || Sbjct 20777564 CCTTCAATGCTGTCATCTTTCATGCACAGGAGAAAGCAACT 20777524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712911996036480