Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq2514 695 0.0 seq13 152 6e-32 seq4 98.7 1e-15 seq19 95.1 2e-14 >seq2514 Length=157033 Score = 695 bits (770), Expect = 0.0 Identities = 752/991 (76%), Gaps = 4/991 (0%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| ||||||||| | ||||| || ||| | || |||||||| | Sbjct 1332 CTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTT 1273 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 ||||||||| ||| | ||| | ||||| |||| || || | || ||| | ||||| | Sbjct 1272 GATGATTCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCC 1214 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || ||||| || || || || ||||| ||| |||| || || | |||||||||| Sbjct 1213 CTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1154 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | ||||| |||||||| || ||||| |||| || || || | ||||| || || | Sbjct 1153 ATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAA 1094 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| ||||| | ||||| ||| | || ||||| |||||||| | || | | Sbjct 1093 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTG 1034 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | |||||| | |||| || || |||||||| |||||||||||| | || || Sbjct 1033 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCC 974 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| ||||||||||||||||| |||||| ||| || |||||||| || || || | Sbjct 973 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTG 914 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 |||| ||| || | ||||| |||||||||| |||| ||||| ||||| || || | Sbjct 913 CTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAA 854 Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733 || ||| || ||||||| |||| |||| ||||| || |||||||||||||| ||||||| Sbjct 853 TCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 794 Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793 | || |||||| | || || |||||||| ||||| || || || |||||||| ||||| | Sbjct 793 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 734 Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTAT 183852 ||||| |||| || || | | | | || | |||||||| || ||| || || | Sbjct 733 GTTCTTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 675 Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||||| || |||||||| ||||| || || || || || || |||||||| || ||| Sbjct 674 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 615 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972 || || |||||||||| |||||| |||||||| ||||||||| | || |||||| | Sbjct 614 GGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTA 555 Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTT 184032 ||||||||||| || || || |||||||| |||||| | ||| ||||||||||||| || Sbjct 554 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 495 Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092 || || |||||||| || |||||||| || | ||||| ||||||||||||| | || Sbjct 494 AATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 435 Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152 |||||||| || || | ||||||||| ||||| |||||||| ||||| || |||||| Sbjct 434 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 375 Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGCTG 184183 ||||| || |||||||| ||||| ||||||| Sbjct 374 GCTCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 524 bits (580), Expect = 9e-144 Identities = 718/1003 (72%), Gaps = 0/1003 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || |||||||| ||||| || || | || | Sbjct 32830 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGTCTATTGCTCT 32889 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || || ||| | || || ||||| ||||| || | Sbjct 32890 TTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCAT 32949 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 |||||||||| || ||||| ||| || | || ||| || || | || || |||| Sbjct 32950 GGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTAACCGCCGCAG 33009 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || ||||||||| | | | | |||||| | | |||| ||||||||||| | | Sbjct 33010 TTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGTCCTGAAGCAC 33069 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||||||| | | || |||| ||| | || || | |||| |||||| || ||||||| Sbjct 33070 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTTGCTCTCCACG 33129 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTCGTAGGTA 186330 |||| || | || |||||||| ||| | || || |||||| | ||| ||| Sbjct 33130 GAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTGCAAT 33189 Query 186331 TCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCC 186390 | || || || ||||| || || || |||||||| || || || |||||| |||||||| Sbjct 33190 TACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGTTTCTGTATTCC 33249 Query 186391 TCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAA 186450 | || || || || || ||||| |||||||| || || ||||| || ||||| | Sbjct 33250 TGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCTA 33309 Query 186451 TCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACA 186510 | ||| ||||| | | || |||||||||| || || ||||| |||| ||||| || | Sbjct 33310 TATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACCCATTTCATA 33369 Query 186511 TGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTG 186570 ||||||| || || ||| | | || | ||||||||| | || || ||||||| ||||| Sbjct 33370 TGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTG 33429 Query 186571 TAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGA 186630 ||||||||||| | | ||||||||| || ||||| |||||| || || | | | Sbjct 33430 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 33489 Query 186631 CGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCG 186690 | |||| |||||||| ||||| |||||||| || ||| | || ||||| || || || | Sbjct 33490 CTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTGGTCCCAAATTTTTG 33549 Query 186691 GAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGG 186750 | |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | | Sbjct 33550 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 33609 Query 186751 GTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACT 186810 || | |||| | | |||| | ||||||| ||||| ||||| ||||| ||||||| Sbjct 33610 GTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACGTGCCTATGACT 33669 Query 186811 TTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGA 186870 | || |||||| | | ||||| || |||||||| || ||||| ||||||||||| | Sbjct 33670 TCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAAA 33729 Query 186871 ATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAA 186930 |||| || || |||||||| | ||||| |||||||| | ||||| || ||||||| Sbjct 33730 ATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 33789 Query 186931 ACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || || |||| ||||| || || | || | || |||||||| Sbjct 33790 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 33832 >seq13 Length=15658869 Score = 152 bits (168), Expect = 6e-32 Identities = 257/372 (69%), Gaps = 0/372 (0%) Strand=Plus/Plus Query 183655 GATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAG 183714 ||||| |||| || || || ||| || ||||||| |||| |||| ||| |||| ||| Sbjct 4833154 GATGGGGTGCCTCTAGGAATATTTGGTACTTTTAACTTTATGATTGTATTCTAAGCTGAG 4833213 Query 183715 CACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCT 183774 || ||||||| || |||| || |||||| | || || | ||| | | | || || Sbjct 4833214 CATTACATCCTTATAGACCCATTTCACATGTTAGGCGTAACAGGTTTATGCAATGACTCC 4833273 Query 183775 CTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAG 183834 | | || || ||||| |||| | |||| || || || | ||||||| | Sbjct 4833274 TTATCCAATGTTATGCATGGTTTTTTGGTAACCTCTAATTTGATCAAGGAAACCAAATAA 4833333 Query 183835 TCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTC 183894 ||| || || | ||||||| || |||||| | ||||| || || |||| || Sbjct 4833334 AATGAATCCACTAATGAAGGTTACAGATTTGGTCAAAAGGAAGAAACTTATGACATCGTA 4833393 Query 183895 GCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGT 183954 | ||||||||| | ||||| | | ||||||| | |||||| ||||||| |||| | Sbjct 4833394 GTTGCTCATGGTTCTTTTGGCTGACCGATCTTCTAATATGCTAGTTTTAACAGCTCTCAT 4833453 Query 183955 TCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGT 184014 ||| | || |||||| | | | ||||||| | | || |||||||| ||| || ||||| Sbjct 4833454 TCTTTACATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATCTGGTTCACTACTTTTGGT 4833513 Query 184015 GTTAGCACTATG 184026 ||||||||||| Sbjct 4833514 ATTAGCACTATG 4833525 >seq4 Length=23188140 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 170999 ATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGG 171058 ||| || || ||||| || || | |||||| |||| || ||||| || | ||||| Sbjct 20462752 ATACATCCTAGATGCAGCCGAGAATGCAGGAGTTGAGCTGCCTTATTCTTGCAGGGCTGG 20462693 Query 171059 TGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATC 171118 ||||||| |||||||||||||| | | |||||||| || || || ||| || Sbjct 20462692 GGCTTGTTGTACCTGTGCTGGGAAGGTGGCATCAGGTTCTGTCGACCAGTCTGATGGTTC 20462633 Query 171119 TTTCCTTGATGATGATCAGATTGAATCA-GGTTTCATTCTGACCTGCGTCTCATATCCTA 171177 ||||||||| || ||||| | |||| | |||| ||||||| ||||| || || || | Sbjct 20462632 TTTCCTTGACGAGGATCA-AATGAAGGACGGTTATCTTCTGACTTGCGTTTCCTACCCAA 20462574 Query 171178 CAAGTGATTGTGTAATCTTGACTGAACAGGAAGAGAACCTTTG 171220 | |||||||| || ||| | |||||| ||||||| Sbjct 20462573 CTTCAGATTGTGTGATTCACACTCACAAGGAAGGTGACCTTTG 20462531 >seq19 Length=16008726 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 186446 AGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATT 186505 ||| || ||| ||||| | | || |||||||||| || || ||||| |||| |||| Sbjct 8026092 AGCTATATTTTGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACGCATT 8026033 Query 186506 CCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGT 186565 || |||| ||| || || ||| | | || | ||||||| | | || || ||||||| Sbjct 8026032 TCATATGACGGGAGTTGCCGGTGTATTGGGCGTTGCTCTGTTATGTGCTATTCATGGTGC 8025973 Query 186566 TACTGTAGAAAATACTCTTTATGAAGATG 186594 |||||||||||||||| || |||||||| Sbjct 8025972 TACTGTAGAAAATACT-TTATTGAAGATG 8025945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622050851437680