Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq2514 690 0.0 seq13 149 7e-31 seq1667 98.7 1e-15 >seq2514 Length=157033 Score = 690 bits (764), Expect = 0.0 Identities = 748/989 (76%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||| ||| |||| || || || ||| | ||| | || ||||| || || || Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 163988 ATGATTCCCTGCCTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTCC 164046 |||||||| | || | || ||| | ||| || || ||||| ||||| | ||| || Sbjct 1271 ATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCCCC 1213 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 ||| || ||||| ||||| || || ||||| || |||| || || | ||||||||||| Sbjct 1212 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1153 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 ||||| |||||||| |||| ||| ||||| ||||| || ||||||| ||||| || Sbjct 1152 TATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAAT 1093 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 |||||||| ||| | || |||||| | |||||||| ||||||| | || |||| Sbjct 1092 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 1033 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286 | |||||| | |||| | | ||||||||| ||||||||||||||| || ||| Sbjct 1032 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCG 973 Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 ||| |||||||||||||||||| || ||||| || |||||||| || || || | ||| Sbjct 972 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGC 913 Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406 || ||| || | ||||| |||||||||| ||| || |||| |||||||| || || Sbjct 912 TGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAAT 853 Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466 |||||| || || |||| ||| | || ||||||||||||||||||||||| |||||||| Sbjct 852 CTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 793 Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526 || || ||| | |||||||| ||||| || ||||| || || |||||||| ||||| || Sbjct 792 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 733 Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586 ||| |||| || ||| || | | || ||||| |||||||| || || | || Sbjct 732 TTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 673 Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646 ||||| |||||||| || |||||||| || || ||||| |||||||| ||||| ||||| Sbjct 672 TTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 613 Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706 || |||| |||||||| ||| || |||||||| ||||| | || |||||| | || Sbjct 612 CCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGC 553 Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766 || |||||||| || ||||||||||| |||||| | || ||||||| ||||| ||||| Sbjct 552 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 493 Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826 || || |||||||| |||||||| || | | ||| |||| |||||||| | || || Sbjct 492 TCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 433 Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886 |||||| || || | ||||||||| || || |||||||| ||||| || |||||||| Sbjct 432 CTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 373 Query 164887 TCACAACTTCCCTCTCGACCTTGCTGCTG 164915 ||| || |||||||| ||||| ||||||| Sbjct 372 TCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 583 bits (646), Expect = 1e-161 Identities = 727/994 (73%), Gaps = 8/994 (1%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||||||||||||||| || ||||| || || | || ||||| ||| ||| || Sbjct 32847 AGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTT 32906 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 || | ||||||||| | || || || || || || || |||||||| || ||| | Sbjct 32907 GCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGGTATACCCATGGATTG 32966 Query 165300 GCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 165359 || ||||||||| | || ||| ||||| | || || |||||||||||||| || | Sbjct 32967 GCCAGTTCCTATTTGGAAGGTTGCAACTTCTTAACCGCCGCAGTTTCTACTCCTGCTAAT 33026 Query 165360 GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGC 165419 | | | |||||| | | | |||||||||||||| | ||||| || || | || Sbjct 33027 AGTTTAGCCCATTCTTTATTATTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 33086 Query 165420 TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATA 165479 ||||| ||| | || || | ||||||||||| || ||||||||||| || | ||| ||| Sbjct 33087 TGGTGTCAATTAGGTGGCTTGTGGACTTTTGTTGCTCTCCACGGAGCTTTCGGACTAATA 33146 Query 165480 GGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGT---ATT-CGTCCTTACAA 165535 ||||| ||| | || || |||||||| || ||| || || ||| || ||||| || Sbjct 33147 GGTTTTATGTTACGTCAATTTGAACTTGCTCGA----TCCGTGCAATTACGACCTTATAA 33202 Query 165536 TGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCT 165595 ||| || || ||||||||||| ||||| || || ||| ||| || || || ||||| || Sbjct 33203 TGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGTTTCTGTATTCCTGATTTATCCACT 33262 Query 165596 GGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCT 165655 || || || |||||||| || || || || || ||||| || || |||||| | Sbjct 33263 AGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCTATATTTCGATTCAT 33322 Query 165656 GCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGC 165715 ||||| ||||||| || ||||| ||||| ||||| || ||||| |||||||| || || Sbjct 33323 CCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACCCATTTCATATGATGGGAGTTGC 33382 Query 165716 AGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTT 165775 ||| | || |||| || |||| | || |||||||||| ||| ||||| |||||||| Sbjct 33383 CGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTT 33442 Query 165776 GTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGA 165835 | |||||||||||| ||||| || ||| || ||| | ||||| | || || Sbjct 33443 ATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGA 33502 Query 165836 AACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAG 165895 |||||||||||||||||| || ||||| || ||||| || |||||||| ||||||| Sbjct 33503 AACTTATTCCATGGTCACCGCCAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTC 33562 Query 165896 CAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAG 165955 |||||| |||||| | || ||||||||| | ||||| || || | || | |||| || Sbjct 33563 CAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAG 33622 Query 165956 TTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGA 166015 | || |||| | ||||||| || || || || ||||| ||||| || || |||||||| Sbjct 33623 TGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGA 33682 Query 166016 GATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAA 166075 || | || || || ||||| || ||||| || |||||||| ||||| || || | || Sbjct 33683 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTTTTAAA 33742 Query 166076 TGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCC 166135 |||||| | ||||| ||| |||| || ||| || |||||||| ||| || | ||||| Sbjct 33743 TGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 33802 Query 166136 TGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 ||| || || | || | || ||||| |||||| Sbjct 33803 TGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 33836 >seq13 Length=15658869 Score = 149 bits (164), Expect = 7e-31 Identities = 325/486 (67%), Gaps = 2/486 (0%) Strand=Plus/Plus Query 164299 TCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGT 164358 |||||||||| || ||||| || |||||| | | || | | || || || || | Sbjct 4833066 TCCTTGGATTGTTGTTGCATATTCAGCTCCTATTGTGACAACTATTGTTGTTTTTTTGAT 4833125 Query 164359 CTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTT 164418 || | | ||| ||| ||| || |||| ||||||| || || | ||| || || Sbjct 4833126 TTACCTAATAGGTTAAGAAAGTTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTT 4833185 Query 164419 CAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCT 164478 |||| ||| | || ||| | |||||||| ||||||| || |||| || || ||| | Sbjct 4833186 TAACTTTATGATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATTTCACATGTT 4833245 Query 164479 CGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTAC 164538 |||||| ||||| | | | || | | || || ||||| |||| |||| || Sbjct 4833246 AGGCGTAACAGGTTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAAC 4833305 Query 164539 TTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGG 164598 ||| || | || |||| ||||||| ||| || | ||||||| ||||| Sbjct 4833306 CTCTAATTTGATCAAGGAAACCAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGG 4833365 Query 164599 TCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTT 164658 ||| | |||||||| || ||||||| | ||||| |||| ||||| | | ||| || Sbjct 4833366 TCAAAAGGAAGAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTT 4833425 Query 164659 CCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGT 164718 | |||| ||| || |||| ||| | ||| | || |||||| | | | |||||| | Sbjct 4833426 CTAATATGCTAGTTTTAACAGCTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTAT 4833485 Query 164719 TGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTT 164778 | ||||||||||| ||| || | || ||||||| ||| | |||| || || ||| Sbjct 4833486 AATAGGTATCTGGTTCACTACTTTTGGTATTAGCACTATGCCTCTCAATCTAAA--TTTT 4833543 Query 164779 CAACTT 164784 | |||| Sbjct 4833544 CTACTT 4833549 >seq1667 Length=4831 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 165165 GACGACTGGCTTA--AAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTT 165222 || |||||| ||| |||| |||||||| |||||||| || |||||||| || | || | Sbjct 2917 GATGACTGG-TTACGAAAG-GACCGTTTTGTTTTTGTGGGTTGGTCTGGTCTATTGCTCT 2974 Query 165223 TTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTT 165282 |||| ||| ||| |||| | ||||||||| | || | | || || || || | Sbjct 2975 TTCCTTATGCCTATTTTGCCTTAGGGGGTTGGTTCACAGTTATAACCTTTGTAACCTCAT 3034 Query 165283 GGTATACTCACGGACTTGCGAGTTCCTATCTTGA--GGGTGCAAACTTTCTTACTGCGGC 165340 ||||||| || ||| | || ||||||||| |||| || ||||| ||| | || || | Sbjct 3035 GGTATACCCATGGATTGGCCAGTTCCTAT-TTGAAAGGTTGCAA-CTTCTTAACCGCTGT 3092 Query 165341 AGTTTCTACTCCAGC 165355 |||||||||||| || Sbjct 3093 AGTTTCTACTCCTGC 3107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557636875710480