Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq2514 657 0.0 seq13 140 4e-28 >seq2514 Length=157033 Score = 657 bits (728), Expect = 0.0 Identities = 743/990 (75%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||| ||| ||||| ||| | || ||||| ||| | || ||||| ||||| || Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||| ||||| | | | || || ||||| || || |||||||| | ||||| || Sbjct 1271 ATGATTCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCC 1213 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || ||||| || || || |||||||| || |||| || || | ||||| ||||| Sbjct 1212 TCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1153 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 |||||||||||||| || ||||| ||||| ||||| || | ||||| || || || Sbjct 1152 TATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAAT 1093 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| || || | ||||| ||| | ||||| || ||||||| | || || | Sbjct 1092 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 1033 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | |||||| | | ||| | | |||||||| ||||||||||||||| || ||| Sbjct 1032 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCG 973 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 || ||||||||||| ||||| ||| ||||| || ||||| || || || || |||| Sbjct 972 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGC 913 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 ||| ||| | ||||||| |||||||||| ||| || || | ||||| || || || Sbjct 912 TGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAAT 853 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 | ||| || || |||| ||| |||| ||||| || |||||||||||||| |||||||| Sbjct 852 CTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 793 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 || |||||||| ||||| |||||||| || || || || || |||||||| ||||| || Sbjct 792 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 733 Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATG 178255 |||| |||| || || | | | | || | |||||||| || || ||| | || | | Sbjct 732 TTCTTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 674 Query 178256 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCG 178315 |||||| || |||||||| ||||| || || || ||||| || ||||||||||| || | Sbjct 673 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 614 Query 178316 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 178375 | || ||||||||||||| || || |||||||| ||||| | || |||||| | | Sbjct 613 GCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAG 554 Query 178376 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 178435 | || |||||||| || |||||||||||||||||| | ||| ||||||| ||||| |||| Sbjct 553 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 494 Query 178436 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACA 178495 | || || |||||||| |||||||| || | | |||||||| || || | || | Sbjct 493 ATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 434 Query 178496 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATG 178555 ||||||| || || | ||||||||| |||||||||||||| ||||| || ||||||| Sbjct 433 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 374 Query 178556 CTCACAACTTCCCTCTTGACCTCGCTGCTG 178585 |||| || |||||||| ||||| ||||||| Sbjct 373 CTCATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 560 bits (620), Expect = 1e-154 Identities = 734/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 |||||| | | ||||||||| | | | || || ||||||||||| |||||||| ||| Sbjct 32820 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGT 32879 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 || | || || ||| ||| || | || | || |||||| |||| || ||||| || Sbjct 32880 CTATTGCTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 32939 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || ||||| |||||||| || || | || ||| ||| | || || || || ||| | Sbjct 32940 GTAACCTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTA 32999 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 || || || || || ||||||||| | | | | ||||| || | | ||||||||| Sbjct 33000 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGT 33059 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 || ||||| || |||||||| || ||| ||| | || || | ||| ||||||| Sbjct 33060 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTT 33119 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACGT 179198 || |||||||| || |||| || |||||||| ||| | || || |||||| | || || Sbjct 33120 GCTCTCCACGGAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33179 Query 179199 CTAGTCGGTATT-CGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257 || | ||| || ||||| ||||||||||| || |||||||||||||| || ||||| Sbjct 33180 TCCGT-GCAATTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGT 33238 Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317 ||||| || || || ||||| || || ||||| |||||||||||||| ||||| Sbjct 33239 TTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 33298 Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377 || ||||| || || || ||| | ||||| | || || || || || ||||| || || Sbjct 33299 CGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAA 33358 Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437 ||| || || |||||||| || || ||| | |||||| || |||| || || ||||| Sbjct 33359 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCA 33418 Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497 ||||||||| ||||| || || | |||||||| |||| ||||||||||| || Sbjct 33419 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33478 Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557 || | || || |||| || || || ||||| ||||| || |||||||| || ||||| Sbjct 33479 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTGGTC 33538 Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617 || || ||||| | || || |||||| |||||| |||||||||||||||| ||||| Sbjct 33539 CCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33598 Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677 || || | ||| | |||| | |||| | ||||||| || || ||||| | Sbjct 33599 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACG 33658 Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737 || |||||||| ||||| || || ||| | || || || |||||||| || ||||| || Sbjct 33659 TGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTT 33718 Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797 ||||||||| || || || || |||||||| | |||||||||||||| | ||||| Sbjct 33719 CTATACCAAAAATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCA 33778 Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || ||||||||| || |||| ||||| || || | || | || |||||||| Sbjct 33779 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 33832 >seq13 Length=15658869 Score = 140 bits (154), Expect = 4e-28 Identities = 266/391 (68%), Gaps = 2/391 (1%) Strand=Plus/Plus Query 178064 TGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACA 178123 |||| || || || ||| || || |||| ||| |||| ||| |||| ||||| ||| Sbjct 4833161 TGCCTCTAGGAATATTTGGTACTTTTAACTTTATGATTGTATTCTAAGCTGAGCATTACA 4833220 Query 178124 TCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCA 178183 |||| || |||| || |||||||| ||||| | ||| | | || || | | || Sbjct 4833221 TCCTTATAGACCCATTTCACATGTTAGGCGTAACAGGTTTATGCAATGACTCCTTATCCA 4833280 Query 178184 GTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAA 178243 || ||||| |||| | |||| || || || | ||||||| | || ||| Sbjct 4833281 ATGTTATGCATGGTTTTTTGGTAACCTCTAATTTGATCAAGGAAACCAAATAAAATGAAT 4833340 Query 178244 GTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTC 178303 || | ||||||| || |||||| | ||||| || || ||||||| | ||||| Sbjct 4833341 CCACTAATGAAGGTTACAGATTTGGTCAAAAGGAAGAAACTTATGACATCGTAGTTGCTC 4833400 Query 178304 ATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGC 178363 |||||| || || | | ||||||| |||| || || |||| ||| | ||| | | Sbjct 4833401 ATGGTTCTTTTGGCTGACCGATCTTCTAATATGCTAGTTTTAACAGCTCTCATTCTTTAC 4833460 Query 178364 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCA 178423 | |||||| | | | |||||| | | ||||||||||||||| || ||||| |||||| Sbjct 4833461 ATTTCTTCTTAGGTTCTTGGCCTATAATAGGTATCTGGTTCACTACTTTTGGTATTAGCA 4833520 Query 178424 CCATGGCATTCAACCTCAACGGTTTCAACTT 178454 | ||| | |||| || || |||| |||| Sbjct 4833521 CTATGCCTCTCAATCTAAA--TTTTCTACTT 4833549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596288461046240