Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq2514 601 4e-167 seq19 114 2e-20 seq13 105 8e-18 >seq2514 Length=157033 Score = 601 bits (666), Expect = 4e-167 Identities = 726/988 (73%), Gaps = 0/988 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||| ||| ||||| |||||| |||||||| ||| | || ||||| || || || Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 ||||| || | || | ||||| || || || ||||| ||||| | ||| || Sbjct 1271 ATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 1212 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || ||||| || || || || ||||| ||| |||| ||||| | ||||| ||||| Sbjct 1211 CCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1152 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 ||||| |||||||| || | || |||| || || || | ||||| || || || Sbjct 1151 ATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATA 1092 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | ||||||||||| |||||||| ||||||| | || |||| Sbjct 1091 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTT 1032 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | |||||| | | || | | ||||||||| |||||||||||| | | ||| Sbjct 1031 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGT 972 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 ||||||||||| |||||||| |||||| || || ||||| |||||||| || | ||| Sbjct 971 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCT 912 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 |||||| || | || || | || ||||| || || || | |||||||| || ||| Sbjct 911 GTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATC 852 Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891 || || || ||||||| ||| | || ||||| ||||||||||||||||| |||||||| Sbjct 851 TCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 792 Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 || |||||| | || || || || || || || || || || || || || ||||| ||| Sbjct 791 TTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 732 Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011 | || || || ||| | || | |||||||| || || || || || | ||| Sbjct 731 TCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 672 Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071 |||| || |||||||| ||||| || || || ||||| |||||||| ||||| || || Sbjct 671 TACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 612 Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131 || ||||||||||||| ||| || |||||||| ||||| | || |||||| | || Sbjct 611 CGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAGCT 552 Query 170132 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAAC 170191 || |||||||| || || ||||||||||| ||| | ||| | ||| ||||| ||||| Sbjct 551 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAT 492 Query 170192 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 170251 || || |||||||| |||||||| || | | ||| |||| |||||||| | || ||| Sbjct 491 CTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 432 Query 170252 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 170311 ||||| || || | ||||||||| ||||| |||||||| ||||| || ||||||||| Sbjct 431 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 372 Query 170312 CACAACTTCCCTCTCGACCTCGCTGCTG 170339 || || |||||||| ||||| ||||||| Sbjct 371 CATAATTTCCCTCTAGACCTAGCTGCTG 344 Score = 587 bits (650), Expect = 9e-163 Identities = 737/1009 (73%), Gaps = 2/1009 (0%) Strand=Plus/Plus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || || || || |||||||| ||||| || || | || | Sbjct 32830 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGTTGGTCCGGTCTATTGCTCT 32889 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||| ||| |||| | || || ||| | || || || || ||||| || | Sbjct 32890 TTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCAT 32949 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784 |||| ||||| ||| | || ||||| || | |||||| || ||| | || || || | Sbjct 32950 GGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAACTTCTTAACCGCCGCAG 33009 Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 33010 TTTCTACTCCTGCTAATAGTTTAGCCCATTCTTTATTATTACTATGGGGTCCTGAAGCAC 33069 Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904 | || ||||| || |||| ||| | || || | |||| |||||| || ||||||| Sbjct 33070 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGCTTGTGGACTTTTGTTGCTCTCCACG 33129 Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGTCTCGTAGGGA 170964 |||| || | || |||||||| ||| | || || |||||| | ||| ||| | | Sbjct 33130 GAGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGT-GCAA 33188 Query 170965 TTA-GACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTC 171023 ||| |||| || ||||||||||| ||||||||||| || || || ||||| || ||| Sbjct 33189 TTACGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCGGTTTTTGTTTCTGTATTC 33248 Query 171024 CTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCA 171083 || || ||||| || || ||||| |||||||||| || ||| ||||| || ||||| Sbjct 33249 CTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCT 33308 Query 171084 ATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCAT 171143 || || || ||| | ||||| | ||||| || || || ||||||||||| ||||||||| Sbjct 33309 ATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACCCATTTCAT 33368 Query 171144 ATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACA 171203 |||||||| ||||| ||| | | |||| ||| |||| | || |||||||||| ||| Sbjct 33369 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACT 33428 Query 171204 GTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACG 171263 ||||| |||||||| | ||||||||||||| ||||| || || || ||| || | Sbjct 33429 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 33488 Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323 ||||| | ||||| || ||||| |||||||| || || || || ||||| || |||||| Sbjct 33489 ACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCCAACCGCTTTTGGTCCCAAATTTTT 33548 Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383 || | || || |||||| |||||||| |||||||||||| | ||||| || || | Sbjct 33549 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 33608 Query 171384 GGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGAT 171443 ||| | ||| | ||| ||| || | ||||||| ||||| || || | || ||||| Sbjct 33609 GGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACGTGCCTATGAC 33668 Query 171444 TTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAG 171503 ||||| |||||| || | ||||| |||||||| || || ||||| ||||||||||| Sbjct 33669 TTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAA 33728 Query 171504 AACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAA 171563 || || || || |||||||| ||||||| |||||||| | ||| || || |||||| Sbjct 33729 AATATTCTTTTAAATGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 33788 Query 171564 AACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||| || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 33789 AACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 33837 >seq19 Length=16008726 Score = 114 bits (126), Expect = 2e-20 Identities = 125/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 171080 AGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATT 171139 ||| || || | ||| | ||||| | ||||| || || || ||||||||||| |||| Sbjct 8026092 AGCTATATTTTGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACACTGAACGCATT 8026033 Query 171140 TCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGT 171199 |||||||| ||| ||||| ||| | | |||| ||| || | | ||| |||||||||| Sbjct 8026032 TCATATGACGGGAGTTGCCGGTGTATTGGGCGTTGCTCTGTTATGTGCTATTCATGGTGC 8025973 Query 171200 TACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACAC 171244 ||| ||||| |||||||| | |||||||| |||| ||||| || Sbjct 8025972 TACTGTAGAAAATACTTTAT-TGAAGATGATGATGGTGCAAATAC 8025929 >seq13 Length=15658869 Score = 105 bits (116), Expect = 8e-18 Identities = 315/485 (65%), Gaps = 2/485 (0%) Strand=Plus/Plus Query 169724 CCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTC 169783 |||||||| |||||| || || ||||| ||| | || | | |||||| || | Sbjct 4833067 CCTTGGATTGTTGTTGCATATTCAGCTCCTATTGTGACAACTATTGTTGTTTTTTTGATT 4833126 Query 169784 TACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTT 169843 |||| | || ||| || || || | ||||||| || || | || || ||| Sbjct 4833127 TACCTAATAGGTTAAGAAAGTTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTTT 4833186 Query 169844 AACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTT 169903 |||| ||| | || ||| |||||||||| ||||||| || |||| || |||||| | Sbjct 4833187 AACTTTATGATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATTTCACATGTTA 4833246 Query 169904 GGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACT 169963 || || | || | | || || | | | | ||||| ||| | || || Sbjct 4833247 GGCGTAACAGGTTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAACC 4833306 Query 169964 TCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGT 170023 || | | | || ||||||| | || || ||| || | ||||||| || ||| Sbjct 4833307 TCTAATTTGATCAAGGAAACCAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGGT 4833366 Query 170024 CAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTC 170083 ||| | ||||| || || ||||||| | ||||| |||| || || | | ||||||| Sbjct 4833367 CAAAAGGAAGAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTTC 4833426 Query 170084 CAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTT 170143 |||| ||| || |||| ||| | ||| | || |||||| | | | |||||| | Sbjct 4833427 TAATATGCTAGTTTTAACAGCTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTATA 4833486 Query 170144 GTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTC 170203 | || ||||||||||| || ||||| | ||| ||| | |||| || || |||| Sbjct 4833487 ATAGGTATCTGGTTCACTACTTTTGGTATTAGCACTATGCCTCTCAATCTAAA--TTTTC 4833544 Query 170204 AACTT 170208 |||| Sbjct 4833545 TACTT 4833549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592179790165280