Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq928 134 2e-26 >seq928 Length=80382 Score = 134 bits (148), Expect = 2e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||||||||| ||||| || || || ||||||||| | | ||| | | || Sbjct 51708 GTTCCAGCATTAAATAAAGTAGGCGATGCATGAGTAAACCATCTCTGAGACATAAAATGA 51767 Query 54485 TACGTCTCG-ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || ||| |||||||| || ||||| || |||||||| || | || | |||||| Sbjct 51768 TAGGT-TCGTATAGCTGAATCAATATCATTTTTGTGAATTCCAACAGATACTCTCATTAA 51826 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||| || || |||||||| | || |||| ||||||||| ||||| |||| | Sbjct 51827 CATGTGTTGTGGCCTTTCAACAACTTTCCCTTTTACTTTCAGCAAATAGGACCTTTCGAG 51886 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||||||||||| || | || |||||| || || || || || Sbjct 51887 GGTTTTAAAACCAAAGTAATCATAATCAAAGTCACGATCATATATTAT 51934 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || || ||||| | || | ||| |||| |||| | |||| || |||||||| ||| ||| Sbjct 50765 CCCCCTTGATCGACATAACGAGCTGTGTCATTAAATACTCGCAGCATTGGAACAATGCCA 50824 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || |||| ||||| || || |||||||| || | ||||| |||||| || ||| Sbjct 50825 TTTGATGTCCCATTTGTTCCACGAATATAGCTGCCCGTAGCACGTATATTATGAACAGAT 50884 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | |||||| || || || || || | || || ||| || |||||| || Sbjct 50885 ACACCTATTCCACCAGCTGACTTGCTTATAACAGCACACTCTTTCAAACAATCATAAATT 50944 Query 54365 CCCTCTATACTATCATCCATCATG 54388 || || |||||||||||| ||||| Sbjct 50945 CCTTCAATACTATCATCCTTCATG 50968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593656617170880