Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1083 114 2e-20 seq139 113 7e-20 seq114 111 2e-19 seq260 102 1e-16 seq187 100 4e-16 seq176 87.8 3e-12 >seq1083 Length=90715 Score = 114 bits (126), Expect = 2e-20 Identities = 166/231 (72%), Gaps = 15/231 (6%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| |||| || ||||| || || | || | Sbjct 36118 ATGCAAATCTTTGTCAAGACTTTAACGGGTAAAACGATTACCA-----------GCTCA- 36071 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || |||| |||| || || || ||||| || || ||||| || || || || Sbjct 36070 GATACTATCGATAATGTTAAGGCA-AAGATACAAGACAAGGAGGGTATTCCGCCGGACCA 36012 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||||||||||||| || |||||| |||||||| |||| || | | |||||||| Sbjct 36011 ACAAAGGCTTATTTTTGCTGGTAAACAACTAGAGGATGGTCGCACTCTTGTGGATTATAA 35952 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || | ||| || |||| | ||| |||| |||||||| Sbjct 35951 CATCCAGAAAGAGTCTA-TTTACACCTGGTGCTTCGTCTACGTGGTGGTAT 35902 >seq139 Length=432677 Score = 113 bits (124), Expect = 7e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| | || || ||||| || || | ||| | || || | Sbjct 177874 ATGCAAATCTTTGTTAAGACGTTGACGGGGAAAACGATCACATTGGAGGTGGAGAGTTCA 177815 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || || ||||||||||| || || || ||||| || || Sbjct 177814 -GACACTATTGATAATGTGAAGGCTAAGATTCAAGATAAGGAGGGGATCCCACCAGACCA 177756 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || ||||| || || ||| | || || |||| || || || Sbjct 177755 GCAGAGGCTGATATTTGCTGGTAAACAGTTGGAAGATGGACGGACTTTAGCTGACTACAA 177696 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 ||||| ||||| || ||| | |||||||||||||| Sbjct 177695 CATTCAGAAAGAGTCCACTCTTCATTTGGTTTTACG 177660 >seq114 Length=372266 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || ||||||||||| || |||||||||||||||||| | ||||| || ||||||||| || Sbjct 349063 CAGGATAAAGAAGGGATTCCACCTGATCAACAAAGGTTGATTTTCGCTGGAAAACAACTA 349122 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | |||||| | | ||| || || || |||||||| || || | ||| ||||| Sbjct 349123 GAAGATGGCCGAACACTTGCAGACTACAACATCCAAAAAGAGTCGACACTTCATCTGGTT 349182 Query 124749 -TTACGTTTACGAGGTGG 124765 ||| | | | ||||||| Sbjct 349183 CTTAGGCTCA-GAGGTGG 349199 >seq260 Length=279698 Score = 102 bits (112), Expect = 1e-16 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | |||||||| || ||||| || || ||| | ||| | || ||| | Sbjct 162774 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACTCTGGAGGTCGAGAGCTCA 162715 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || || || |||| || ||||| ||||||||||| || || || || || | Sbjct 162714 -GACACCATCGACAACGTTAAGGCA-AAAATCCAAGATAAAGAGGGAATCCCTCCAGACC 162657 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||| || || || || |||||||| | |||||| |||| || | | || |||| Sbjct 162656 AGCAAAGACTCATCTTCGCTGGAAAACAGCTCGAGGATGGTCGTACCCTTGCCGACTATA 162597 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || || ||| || | || ||||| |||||||| ||||||| || Sbjct 162596 ACATCCAGAAGGAAAGTACCCTACACTTGGTCCTACGTTTAAGAGGTGGGAT 162545 >seq187 Length=363338 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||||| || ||||| || || ||| | ||| | || Sbjct 30572 ATGCAGATCTTTGTGAAGACACTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGTTCC 30513 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || ||||| || |||||||| || ||||| || || || Sbjct 30512 GACACCATCGACAACGTCAAGGCAAAAATCCAGGATAAAGAGGGCATACCTCCAGACCAG 30453 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| || || |||||||| ||||||| |||| || || | || || ||| Sbjct 30452 CAAAGGCTTATATTCGCTGGAAAACAGCTAGAGGACGGTCGTACCTTGGCCGACTACAAT 30393 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||| || | ||| |||| ||||| | | |||||||| Sbjct 30392 ATCCAAAAGGAAAGTACCCTTCATCTGGTCCTACGTCTCAGGGGTGGTAT 30343 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || ||||| || | ||| | || ||| Sbjct 21766 ATGCAGATTTTTGTCAAGACCCTTACCGGGAAGACTATCACCTTGGAGGTGGAGAGCTC- 21708 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | || ||||||||| ||||| || ||||| || || || || Sbjct 21707 TGATACGATCGATAACGTGAAGGCGAAAATTCAGGATAAGGAGGGTATTCCCCCGGACCA 21648 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || || || || ||| | | || || | |||||||| Sbjct 21647 GCAGAGGTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGGAGGACTTTGGCCGATTATAA 21588 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || ||||| || ||| | || | || | ||| | || |||||| Sbjct 21587 TATCCAGAAAGAGTCTACTCTTCACCTTGTCCTCCGTCTCCGTGGTGGT 21539 Score = 89.7 bits (98), Expect = 8e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 ||||||||||||||| || || || || || |||||||| ||||| || ||||| || || Sbjct 41744 GAAAATTCAAGATAAGGAGGGAATTCCCCCAGATCAACAGAGGCTCATCTTTGCCGGTAA 41685 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 ||| | ||||| | || || | | || || || || || || || || || |||| Sbjct 41684 ACAGCTTGAGGACGGACGTACCCTTGCCGACTACAACATCCAGAAGGAGTCTACCCTGCA 41625 Query 124742 TTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| | || |||||||| Sbjct 41624 CTTGGTCCTACGTCTTCGTGGTGGTAT 41598 >seq176 Length=237547 Score = 87.8 bits (96), Expect = 3e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| | || ||||| ||||| ||||| ||| |||| || ||| | || ||| Sbjct 213035 GACACAATAACAAAAATAAAATCCAAAATACAAGAAAAACAAGGAATTCCAACAGACCAA 212976 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || | ||||||||||||| | || ||| || ||| || || ||| || Sbjct 212975 CAGAGACTAATATATGCAGGAAAACAACTTGAAGATGGTAAAACCTTGTCTGACTATGAT 212916 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 | |||||||| || ||||||||| || | ||| | | ||||||| ||| || Sbjct 212915 GTACAAAAAGAGTCCACTTTGCATGTGTTGTTAAGGATTAAAGGTGGTGATAAGAA 212860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755373315340800