Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq187 122 1e-22 seq260 116 4e-21 seq1646 114 1e-20 seq1083 111 2e-19 seq139 95.1 1e-14 seq3090 82.4 9e-11 >seq187 Length=363338 Score = 122 bits (134), Expect = 1e-22 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | |||| ||| | || || |||||||| |||||||| || ||| Sbjct 30346 CCACCCCTGAGACGTAGGACCAGATGAAGGGTACTTTCCTTTTGGATATTGTAGTCGGCC 30405 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || |||| |||||||| || ||||||||||| || | |||||||| | || Sbjct 30406 AAGGTACGACCGTCCTCTAGCTGTTTTCCAGCGAATATAAGCCTTTGCTGGTCTGGAGGT 30465 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 43132 | || ||| || ||| ||||||| |||| ||| | | | |||||| ||| || Sbjct 30466 ATGCCCTCTTTATCCTGGATTTTTGCCTTGA-CGTTGTCGATGGTGTCGGAACTC---TC 30521 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 30522 GACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCAT 30572 Score = 120 bits (132), Expect = 3e-22 Identities = 159/214 (74%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| || |||||||| || || ||||||||||| || || || |||| || Sbjct 22014 ACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCAGCTAGGGTGCGGCCGTCCTCC 22073 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| ||||| ||||| ||||| | |||||| || | || | | |||||||| | || Sbjct 22074 AGCTGTTTACCGGCGAAGATGAGCCTCTGCTGATCCGGGGGAATTCCCTCCTTGT-CTTG 22132 Query 43095 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 | |||| | |||| ||| | | | ||||| |||| || || || | ||||||| Sbjct 22133 AATTTTGGCCTTGA-CGTTGTCTATGGTGTCGGAGCTC---TCAACCTCCAAGGTGATGG 22188 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || | |||||| |||||||||||||| Sbjct 22189 TCTTGCCGGTCAACGTCTTGACAAAGATTTGCAT 22222 Score = 105 bits (116), Expect = 8e-18 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | || |||||| || || ||||||||||| || || || |||| || Sbjct 22241 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGGGTACGYCCGTCCTC 22300 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| ||||| ||||| ||||| | ||||||||| | || | | ||||||||| | Sbjct 22301 AAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCTGGGGGAATCCCTTCCTTGTCC-T 22359 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | || | |||| | | | ||||| ||| || || | |||||||| | Sbjct 22360 GAATCTTGGCCTTGACATTGTCAATGGTGTCAGAACTTTCAACCTCAAGGGTGATGGTCT 22419 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| |||||||||||||| Sbjct 22420 TGCCAGTAAGAGTCTTGACAAAGATTTGCAT 22450 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| |||| || |||||| || || ||||||||||| || || ||| | Sbjct 29445 ACGGAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAATCAGCTAGGGTACGCCC 29504 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| || || || || || | | ||||||||| | || | | |||||| Sbjct 29505 ATCCTCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATACCCTCCTT 29564 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 43143 ||| ||| | || | || | | | | |||||| |||| ||||| || | | Sbjct 29565 ATCC-TGAATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTC---TCCACCTCCAAGG 29620 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || || || ||||| || || ||||||||||| Sbjct 29621 TGATAGTCTTCCCAGTCAGCGTTTTGACGAAGATTTGCAT 29660 >seq260 Length=279698 Score = 116 bits (128), Expect = 4e-21 Identities = 158/214 (74%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| || |||||||| || || ||||||||||| || || || | || || Sbjct 162338 ACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCAGCTAGGGTACGGCCATCCTCG 162397 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || |||||||| ||||| || || | ||||||||| | || | | |||||| | | || Sbjct 162398 AGTTGCTTACCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTAT-CTTG 162456 Query 43095 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 | |||| | |||| ||| | | | ||||| |||| ||||| || | ||||||| Sbjct 162457 AATTTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTC---TCCACCTCCAAGGTGATGG 162512 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || |||||||| || ||||||||||| Sbjct 162513 TCTTGCCGGTCAGCGTCTTGACGAAGATTTGCAT 162546 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||||||| | ||||| || | || || ||||| || || || || || || Sbjct 162548 CCACCTCTTAAACGTAGGACCAAGTGTAGGGTACTTTCCTTCTGGATGTTATAGTCGGCA 162607 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||| || |||||||| ||||||| |||||||| | || Sbjct 162608 AGGGTACGACCATCCTCGAGCTGTTTTCCAGCGAAGATGAGTCTTTGCTGGTCTGGAGGG 162667 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||| || | | || |||||| | | ||| | | | ||||| |||| || Sbjct 162668 ATTCCCTCTTTAT-CTTGGATTTTTGCCTTAACGTTGTCGATGGTGTCTGAGCTC---TC 162723 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 162724 GACCTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 162774 >seq1646 Length=84127 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| ||||| | ||||| || | ||||||||||| || |||||||| || || Sbjct 62099 CCACCTCTCAAACGTAGGACCAAGTGTAGGGTGCTCTCCTTCTGGATATTGTAGTCGGCT 62158 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || |||| |||||| || || || ||||| | ||||||||| | || Sbjct 62159 AGGGTACGACCATCTTCTAACTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 62218 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | ||| || ||| ||| |||| | |||| ||| | | | || ||| ||| | Sbjct 62219 ATACCCTCTTTATCC-TGAATTTTAGCCTTGA-CGTTGTCGATGGTATCGGAGCTTTCGA 62276 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||| |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 62277 CCTCGAGAGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 62325 Score = 100 bits (110), Expect = 3e-16 Identities = 155/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | || |||||| || || ||||| ||||| || || ||| | || || Sbjct 61660 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGCCCATCCTC 61719 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| || ||||| ||||| | ||||||||| | || | || |||||| || | Sbjct 61720 GAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCT-T 61778 Query 43094 GATTTTTTGT-TTGAGCGTCGCCACC-GTGTCG---CTCGATTCCACATCGACCGTGATG 43148 || | || | |||| ||| | || |||||| ||| || || || | |||||| Sbjct 61779 GAATCTTCGCCTTGA-CGTTGTCAATAGTGTCGGAACTC---TCAACCTCAAGGGTGATG 61834 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || || ||||| |||||||| ||||| Sbjct 61835 GTTTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 61869 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| |||||||| ||||| || || || |||| || ||||| ||||| || || Sbjct 61906 CTCCTTTTGGATATTGTAGTCAGCTAGGGTGCGGCCGTCTTCGAGCTGTTTACCGGCAAA 61965 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||| | || | | ||| ||||| |||||| |||| | Sbjct 61966 GATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATTTTCGCCTTGACATT 62025 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| ||| || || | || ||||| || || || || ||||| Sbjct 62026 GTCAATGGTGTCAGAGCT---TTCAACTTCCAAGGTAATGGTCTTTCCGGTGAGAGTCTT 62082 Query 43169 TACAAAGATTTGCAT 43183 ||||||||||||||| Sbjct 62083 TACAAAGATTTGCAT 62097 >seq1083 Length=90715 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||||||| | ||| | ||| | || |||||| || || ||||| || || Sbjct 36349 CCGCCTCTTAAACGGAGCACGAGATGTAGAGTAGACTCCTTCTGTATGTTGTAGTCGGCT 36408 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || || || || ||||| || ||||||| ||||| || | ||| Sbjct 36409 AAAGTGCGACCATCCTCGAGTTGTTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGCGGG 36468 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || ||| |||||| || |||| | || ||| | | | |||||| |||||| Sbjct 36469 ATGCACTCTTTGTCC-TGTATTTTCGATTTCACGTTGTCGATTGTGTCGGAGCCTTCCAC 36527 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||||||||| || ||||| || || |||||||| ||||| Sbjct 36528 CTCGAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACAAAGATCTGCAT 36575 >seq139 Length=432677 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||||||||| || || || |||| || |||||||| || || || Sbjct 178368 TCCTTTTGAATGTTGTAATCAGCAAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCAAAG 178427 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 ||||| | |||||| || | ||| | | |||||||| | ||| | ||||| |||| | Sbjct 178428 ATGAGCCTCTGCTGATCTGGCGGAATACCCTCCTTGT-CTTGAATCTTTGTCTTGACATT 178486 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | || || |||| || || || | || || || || || || || || || Sbjct 178487 ATCGATGGTATCCGAGCTC---TCAACCTCTAGAGTAATAGTCTTTCCAGTGAGGGTTTT 178543 Query 43169 TACAAAGATTTGCATT 43184 ||||||||||||||| Sbjct 178544 CACAAAGATTTGCATT 178559 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| | ||| | ||||| ||| | || ||||| ||||| ||||| ||||| Sbjct 178559 TCCACCTCTAAGACGGAGCACCAGATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCAGC 178618 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || |||||||| ||||| || || || | |||||| || | ||| Sbjct 178619 TAGGGTTCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATTAGCCTCTGCTGATCTGTCGG 178678 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||| ||||| ||||| ||||| | | || || || |||||| Sbjct 178679 GATGCCCTCTTTGTCTTGTATTTTGGATTTGACACTTTCGACAGTATCAGGACTTTCCAC 178738 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || || || || || || || || ||||| || ||||| Sbjct 178739 ATCGAGGGTTATAGTCTTTCCGGTAAGGGTTTTGACAAATATCTGCAT 178786 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || ||||| | ||||||||| | ||| |||||| || || ||||||| || Sbjct 177876 CCTCCCCTCAAACGGAGCACCAAATGAAGTGTCGACTCCTTCTGTATGCTGTAATCTGCA 177935 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| ||||||||||| || ||||| || || | |||||| || | || Sbjct 177936 AGTGTACGACCGTCCTCTAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGAGGA 177995 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||| || ||| ||| ||| || | | | | || || ||| || Sbjct 177996 ATACCCTCTTTATCCTGGATCTTTGCCTTAACATTATCGATTGTATCAGAACTC---TCG 178052 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| ||||| || | ||||| ||||| || ||||| Sbjct 178053 ACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTAACAAAAATCTGCAT 178102 >seq3090 Length=5479 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || | || | || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 4431 AAAAAATTGCGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 4490 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 4491 TTACCACTATACTAC 4505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571755014563680