Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1646 118 7e-22 seq187 107 1e-18 seq1470 105 4e-18 seq1083 93.3 3e-14 >seq1646 Length=84127 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||||| || || || ||||| || |||||||||| || ||| | || Sbjct 62114 AGGACCAAGTGTAGGGTGCTCTCCTTCTGGATATTGTAGTCGGCTAGGGTACGACCATCT 62173 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || |||||||| || || || ||||||| ||||||||| ||| | | ||| || || Sbjct 62174 TCTAACTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATACCCTCTTTATCC 62233 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||| | | | | || | ||||| |||||| || | |||||||| Sbjct 62234 TGAATTTTAGCCTTGACGTTGTCGATGGTATCGGAGCTTTCGACCTCGAGAGTGATGGTC 62293 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||||||||| |||||||||||||||||| Sbjct 62294 TTGCCGGTGAGAGTCTTCACAAAGATCTGCATC 62326 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||| ||||||| ||| | ||| || ||||| ||||||||||| | Sbjct 61643 CCACCCCTCAACCTGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCA 61702 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||| || ||||| ||||||| ||||||||| ||| Sbjct 61703 AGGGTACGCCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGA 61762 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | | | | || | |||| || || Sbjct 61763 ATGCCCTCCTTATCTTGAATCTTCGCCTTGACGTTGTCAATAGTGTCGGAACTCTCAACC 61822 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||||||||| || || || |||||||||||||| Sbjct 61823 TCAAGGGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 61869 >seq187 Length=363338 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||| ||||||| ||| | ||| || ||||| || |||||||| | Sbjct 22679 TCCACCCCTCAGCCTGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGC 22738 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | ||| || || ||||| ||||||| ||||||||| || Sbjct 22739 AAGGGTACGACCATCCTCGAGCTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCTGGAGG 22798 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||| || ||||| ||| | | | | || | |||| |||||| Sbjct 22799 GATTCCCTCCTTATCCTGAATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCGAC 22858 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| || ||||| |||||||||||||||||| Sbjct 22859 CTCAAGAGTGATGGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCATC 22907 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||||| ||| || ||||| || |||||||||| || ||| |||| Sbjct 30133 AGGACCAAGTGTAGGGTAGACTCCTTCTGGATATTGTAGTCGGCAAGGGTACGACCGTCC 30192 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||| ||||||| ||||||||| ||| | | ||||||||| Sbjct 30193 TCGAGCTGTTTTCCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCT 30252 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||| | || | | || | || | |||||| || | |||||||| Sbjct 30253 TGAATTTTCGCCTTGACATTGTCGATGGTGTCAGAGCTTTCGACTTCAAGGGTGATGGTC 30312 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| || ||||||||||||||||| Sbjct 30313 TTACCGGTGAGGGTCTTCACAAAGATCTGCAT 30344 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || ||||| || | |||||||| || || || |||||||||| || ||| |||| Sbjct 30361 AGGACCAGATGAAGGGTACTTTCCTTTTGGATATTGTAGTCGGCCAAGGTACGACCGTCC 30420 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||| || |||| |||||||| || | || ||| || || Sbjct 30421 TCTAGCTGTTTTCCAGCGAATATAAGCCTTTGCTGGTCTGGAGGTATGCCCTCTTTATCC 30480 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || ||| ||| | | | | || | |||| ||||| || | |||||||| Sbjct 30481 TGGATTTTTGCCTTGACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTC 30540 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||| || |||||||||||||||||| Sbjct 30541 TTGCCGGTGAGTGTCTTCACAAAGATCTGCATC 30573 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||| ||||||| ||| | ||| ||| ||||| ||||||||||| | Sbjct 29890 CCACCCCTCAACCTGAGCACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGCA 29949 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||||| ||||| ||||||| |||||||| ||| Sbjct 29950 AGGGTACGTCCGTCCTCAAGTTGCTTGCCGGCGAAGATGAGCCTTTGCTGGTCTGGGGGG 30009 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | || ||||| ||||| ||||| | | || | |||| || || Sbjct 30010 ATCCCTTCTTTGTCCTGAATCTTGGCCTTTACGTTATCAATGGTGTCGGAACTCTCAACC 30069 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || ||||| || |||||||||||||| Sbjct 30070 TCGAGGGTGATGGTCTTGCCCGTAAGAGTCTTGACAAAGATCTGCAT 30116 >seq1470 Length=49555 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| || ||||| || ||||| ||||||||||||| || ||| | || Sbjct 30827 AGGACCAAGTGCAAGGTACTCTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGACCATCC 30768 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || || || ||||||| ||||||||| || | | |||||| || Sbjct 30767 TCAAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATTCCCTCCTTATCT 30708 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || ||| ||| | | | || | |||| ||||| || | |||||||| Sbjct 30707 TGGATTTTTGCCTTAACGTTATCAATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTC 30648 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||| || |||||||||||||||||| Sbjct 30647 TTGCCGGTGAGTGTCTTCACAAAGATCTGCATC 30615 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||| ||||||| ||| | ||| || ||||| ||||||||||||| Sbjct 31298 CCACCCCTCAACCTGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 31239 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||| || || || || || | || ||||||||| ||| Sbjct 31238 AGRGTACGTCCGTCCTCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 31179 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | || | |||| |||||| Sbjct 31178 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCAATAGTGTCGGAACTTTCGACC 31119 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || ||||| || || || |||||||| Sbjct 31118 TCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTGACGAATATCTGCAT 31072 >seq1083 Length=90715 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG--ACAGCTGACGGTCGT 34235 ||||| || |||| |||| || ||||||||||||||||||| | || || || | | Sbjct 36364 AGCACGAGATGTAGAGTAGACTCCTTCTGTATGTTGTAGTCGGCTAAAG-TG-CGACCAT 36421 Query 34236 CGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTG 34294 | || | || || || || || ||||| | ||||| || | |||| | || ||| ||| Sbjct 36422 CCTCGAGTTGTTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGCGGG-ATGCACTCTTTG 36480 Query 34295 TCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 || ||| ||| | ||| | | | | || | |||| ||| || || | ||||| Sbjct 36481 TCCTGTAT-TTTCGATTTCACGTTGTCGATTGTGTCGGAGCCTTCCACCTCGAGGGTGAT 36539 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||| ||||| || ||||||||||||||||||||| Sbjct 36540 GGTTTTTCCGGTTAGGGTTTTCACAAAGATCTGCATC 36576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323037523775360