Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq2233 100 2e-16 >seq2233 Length=51071 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||||||||| || || ||||||| ||||||||||||||||| ||||||||| Sbjct 6567 CAGTTTTACGTTGCGAAAGGCGAGCTGTCGTGCCAAATGTATCAACGATCTGCTGATATG 6508 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || |||| || || || ||||| ||| |||||| || | || | |||||||| ||| Sbjct 6507 GGTTTGGGGGTGCCATTTAATATCGCATCTTATGCCCTTTTGACATGCATGATTGCTCAT 6448 Query 20551 GTT 20553 ||| Sbjct 6447 GTT 6445 Score = 98.7 bits (108), Expect = 8e-16 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 20421 TATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATC 20480 |||||| ||| | |||||||| || ||| || | || |||||||||||||| ||||| Sbjct 16609 TATGCT-TGC-AGTTTTACGTAGCCAATGGCGAGCTATCTTGTCAAATGTATCAGCGATC 16552 Query 20481 CGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATAT 20540 ||||||||||| |||| || || |||||||| ||| |||||| || | || | || Sbjct 16551 TGCTGATATGGGCTTGGGAGTGCCATTCAATATCGCATCTTATGCCCTTTTGACATGCAT 16492 Query 20541 GATTGCACATGTT 20553 |||||| |||||| Sbjct 16491 GATTGCTCATGTT 16479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399141401578420