Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq187 104 2e-17 seq1646 98.7 9e-16 seq771 98.7 9e-16 seq139 98.7 9e-16 >seq187 Length=363338 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 31182 TTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACG 31241 || ||||| | ||||| || || || ||||| || || ||||| || ||||| |||| | Sbjct 30583 TTAAATCACAGATGCAGATCTTTGTGAAGACACTCACCGGCAAGACCATCACTCTCGAGG 30524 Query 31242 TTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGC 31301 | || ||||||| |||| | ||||| | ||| ||| || || ||| | | Sbjct 30523 TCGAGAGTTCCGACACCATCGACAACGTCAAGGCAAAAATCCAGGATAAAGAGGGCATAC 30464 Query 31302 CGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGA 31361 | || |||||||| | || ||||||||||| |||||| | || ||| | || || Sbjct 30463 CTCCAGACCAGCAAAGGCTTATATTCGCTGGAAAACAGCTAGAGGACGGTCGTACCTTGG 30404 Query 31362 GCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || ||||| ||| || ||||||||||| || | || ||||| |||| Sbjct 30403 CCGACTACAATATCCAAAAGGAAAGTACCCTTCATCTGGTCCTACGTCTCAGGGGTGGTA 30344 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || |||||||| || ||||| || |||||| | || |||||| || Sbjct 22451 CATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACCATCACCCTTGAGGTTGAAAGTTC 22392 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || |||||||||||| | || || ||||| Sbjct 22391 TGACACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATTCCCCCAGACCA 22332 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 |||| | || || ||||| || |||||| | || ||| || | ||| ||||| | Sbjct 22331 GCAGAGGCTCATCTTCGCCGGTAAACAGCTTGAGGACGGRCGTACCCT-AGCTGATTACA 22273 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| || || || || || || || |||| || || ||||||| |||| Sbjct 22272 ACATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCAGGTTGAGGGGTGGTA 22222 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || || || |||||| | || ||||| || Sbjct 29432 ATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACTATCACCTTGGAGGTTGAGAGTTCG 29373 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || ||| ||||| || | || || |||||| Sbjct 29372 GATACGATCGACAACGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 29313 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || ||||| ||||||||||| | |||| || |||||||||| Sbjct 29312 CAGAGGTTGATCTTTGCAGGCAAGCAGTTGGAAGATGGGAGGACTTTGGCCGATTATAAC 29253 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || |||||||| || || || Sbjct 29252 ATCCAGAAAGAGTCCACTCTTCACCTTGTCCT 29221 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || || || || || |||||| | || || || || Sbjct 21766 ATGCAGATTTTTGTCAAGACCCTTACCGGGAAGACTATCACCTTGGAGGTGGAGAGCTCT 21707 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || ||| ||| ||||| || | || || |||||| Sbjct 21706 GATACGATCGATAACGTGAAGGCGAAAATTCAGGATAAGGAGGGTATTCCCCCGGACCAG 21647 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || ||||| ||||||||||| | |||| || ||||||||| Sbjct 21646 CAGAGGTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGGAGGACTTTGGCCGATTATAAT 21587 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || |||||||| || || || Sbjct 21586 ATCCAGAAAGAGTCTACTCTTCACCTTGTCCT 21555 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || |||||| | || || || || Sbjct 41371 ATGCAGATCTTTGTCAAGACCCTTACGGGGAAGACCATCACCCTGGAGGTGGAGAGCTCG 41312 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||| ||||| || | || || || ||| Sbjct 41311 GACACCATCGATAATGTGAAGGCTAAGATCCAGGATAAGGAGGGTATTCCTCCAGATCAG 41252 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||||||||||||||||||||| | ||| || ||||||||| Sbjct 41251 CAGAGGTTGATCTTCGCTGGCAAACAGTTGGAAGATGGGAGGACGTTGGCTGATTATAAC 41192 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || |||||||| || || || Sbjct 41191 ATCCAGAAAGAGTCTACTCTTCACCTTGTCCT 41160 >seq1646 Length=84127 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || ||||| | || || || || Sbjct 61413 ATGCAGATATTCGTCAAGACCCTTACTGGGAAGACCATCACATTGGAGGTGGAGAGCTCG 61354 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || |||| | | || | ||| ||||||||| ||| | || || ||||| Sbjct 61353 GATACCATTGACAACGTTAAGGCAAA-AATTCAGGACAAGGAGGGCATTCCCCCAGACCA 61295 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || || ||||| ||||||||||| | |||| || ||||||||| Sbjct 61294 GCAGAGGTTGATCTTTGCAGGCAAGCAGTTGGAAGATGGGAGGACTTTGGCCGATTATAA 61235 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || |||||||| || || || Sbjct 61234 CATCCAGAAAGAGTCCACTCTTCACCTTGTCCT 61202 >seq771 Length=161796 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || ||||| || || ||||| | || || || ||| Sbjct 43498 ATGCAGATATTCGTCAAGACCCTCACAGGGAAGACCATCACTTTGGAGGTCGAGAGCTCC 43557 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||| | || |||||||||||| | || || |||||| Sbjct 43558 GACACCATTGATAACATCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCCCCTGACCAG 43617 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| |||||||||||| | | |||| || |||||||||| Sbjct 43618 CAGAGGTTGATCTTTGCTGGGAAACAGTTGGAATATGGGAGGACTTTGGCCGATTATAAC 43677 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || ||||| || || || || Sbjct 43678 ATCCAGAAAGAGTCTACTCTACACCTTGTTCT 43709 >seq139 Length=432677 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || ||||||||||| | || || || || Sbjct 177874 ATGCAAATCTTTGTTAAGACGTTGACGGGGAAAACGATCACATTGGAGGTGGAGAGTTCA 177815 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | || || ||||| || | || || |||||| Sbjct 177814 GACACTATTGATAATGTGAAGGCTAAGATTCAAGATAAGGAGGGGATCCCACCAGACCAG 177755 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | || ||||| ||||| |||||||||||||| |||| | ||| || || || Sbjct 177754 CAGAGGCTGATATTTGCTGGTAAACAGTTGGAAGATGGACGGACT-TTAGCTGACTACAA 177696 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| ||||| || ||||||||| |||| | | ||| |||| || Sbjct 177695 CATTCAGAAAGAGTCCACTCTTCATTTGGTTTTACGCCTGCGGGGAGG 177648 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || || || || || ||| |||| || ||| |||| Sbjct 178786 ATGCAGATATTTGTCAAAACCCTTACCGGAAAGACTATAACCCTCGATGTGGAAA-GTCC 178728 Query 31253 -GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||||||| |||||| | |||| ||||| || ||| | ||| | || || Sbjct 178727 TGATACTGTCGAAAGTGTCAAATCCAAAATACAAGACAAAGAGGGCATCCCGACAGATCA 178668 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 |||| | ||||| || ||||| || ||| | || || || | ||| || || | Sbjct 178667 GCAGAGGCTAATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGAACCCT-AGCTGACTACA 178609 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||| || ||||| || ||||||||||| || Sbjct 178608 ACATTCAGAAGGAATCAACCCTTCATCTGGTGCT 178575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445717610867520