Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq928 95.1 1e-14 >seq928 Length=80382 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38164 CTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGT 38223 |||||| |||| || |||| | ||| | | |||||| |||| ||| || | ||| || Sbjct 50756 CTTTTACCACCCCCTTGATCGACATAACGAGCTGTGTCATTAAATACTCGCAGCATTGGA 50815 Query 38224 ACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTA 38283 || || ||||| ||| | || ||| | || ||||| | ||| |||| ||||||||| Sbjct 50816 ACAATGCCATTTGATGTCCCATTTGTTCCACGAATATAGCTGCCCGTAGCACGTATATTA 50875 Query 38284 CTTATCGACAATCCTATTCCACCTGCATGTTTTG-ATATTAAAGCGCATTGTTTTAACGT 38342 | || | ||||||||||| || || ||| ||| | ||| || | ||| || Sbjct 50876 TGAACAGATACACCTATTCCACCAGC-TGACTTGCTTATAACAGCACACTCTTTCAAACA 50934 Query 38343 ATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACT 38393 |||| | || ||||| ||||| |||||||| || || || || ||||| Sbjct 50935 ATCATAAATTCCTTCAATACTATCATCCTTCATGCATACTAAGAAGCAACT 50985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468473519960640