Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03]
8,756 sequences; 309,692,940 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq928 125 1e-23
seq694 113 6e-20
seq1254 107 3e-18
seq524 93.3 6e-14
>seq928
Length=80382
Score = 125 bits (138), Expect = 1e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
||||| ||||||||||| ||||| || || || ||||||||| | | ||||| | ||
Sbjct 51708 GTTCCAGCATTAAATAAAGTAGGCGATGCATGAGTAAACCATCTCTGAGACATAAAATGA 51767
Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
|| || |||||||| || ||||| || |||||||| || | || | |||||||
Sbjct 51768 TAGGTTCGTATAGCTGAATCAATATCATTTTTGTGAATTCCAACAGATACTCTCATTAAC 51827
Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514
||||| || || |||||||| | || |||| ||||| ||| || || |||| |
Sbjct 51828 ATGTGTTGTGGCCTTTCAACAACTTTCCCTTTTACTTTCAGCAAATAGGACCTTTCGAGG 51887
Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
|||||||||||||| || | || |||||| || || || || ||
Sbjct 51888 GTTTTAAAACCAAAGTAATCATAATCAAAGTCACGATCATATATTAT 51934
>seq694
Length=127158
Score = 113 bits (124), Expect = 6e-20
Identities = 248/367 (68%), Gaps = 10/367 (3%)
Strand=Plus/Minus
Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727
||| ||||| || || || | ||| || || |||||||||||||| | ||| |||
Sbjct 32678 TTTCTGGTACTCCCCAACTCTTTTCTCAAAGAAATTAGTTTTTCCCTGCAAACTGATAAG 32619
Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787
||||| ||||||||||||| ||||| || ||||||| | | ||||| | |
Sbjct 32618 CTCCATCCAATCAAACGGATTTTGCACATTGTACATTTTTTCATACCCCAAAGCCTGCAA 32559
Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847
| |||||| || ||||| || || || |||||| |||| ||||||||| | |||
Sbjct 32558 AAGTCTATCGGCCACAAACTCGATGTAAACGCTCATCAGATCACCATTCATTCCCACAAG 32499
Query 49848 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905
| || | || |||| || ||||||| | ||||| |||||||| | | |
Sbjct 32498 GGCACAAGGTAATGCATCGCA--AACAAATTCTCGCTCAATCACGACCGCATCAGACACA 32441
Query 49906 ATAGATCTAACGGTTTCTTCACTCGG--TG-GATGCAATAAATGTTTAAACATCAAACAT 49962
|| ||| || | || ||||| | || | || || | | | | ||||||
Sbjct 32440 ATCTCTCTCACCCTCTCCTCACTAAGCTTGTTTTTCAGCAACTCGT---AGAGCAAACAA 32384
Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022
|| ||||| ||||| || |||||||||| | ||| | || || || |||||||| ||
Sbjct 32383 GCAAAATCACAGTGAAGGCCCTCGTCTCGAGAAATCAACTCATTTGAGAACGTGAGACCT 32324
Query 50023 GGCATTA 50029
|||||||
Sbjct 32323 GGCATTA 32317
>seq1254
Length=70693
Score = 107 bits (118), Expect = 3e-18
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154
|| || ||||| | || | ||| |||| ||| |||| | |||||| ||||| ||||||
Sbjct 37259 CCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACACGCAACATGGGAATTATACCA 37200
Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214
|| ||||| ||||| || || ||||| || || | || || ||||| || |||
Sbjct 37199 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCCCGGATATTGTGAACWGAT 37140
Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274
| ||| |||||||| || || ||| | ||| ||| ||| || |||||||| ||
Sbjct 37139 ACACCAATTCCCCCAGCAGACTTGCTGATGACTGCACATTCTTTCAAGGTATCATAAATT 37080
Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315
|| || ||||||||||| |||| | || ||||||||
Sbjct 37079 CCTTCAATGCTATCATCTTTCATACACACCAGGAAACAGCT 37039
Score = 104 bits (114), Expect = 3e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
|| || ||||| || | || || || ||||| || ||||| | | |||| |||| |
Sbjct 36353 GTCCCAGCATTGAAGAGAGTCGGTGATGCGTGAGTGAACCACCTCTGGGACATGAGATGG 36294
Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
||||| | | | || || |||||| || ||| || || || || || | ||| |||
Sbjct 36293 TACGTTTTTAAGACAGAATCAATATCCTCTTTATGTATCCCAACAGCAACTCTCATCAAC 36234
Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514
||||| || ||||| || || | ||| | ||||||||||||||||| | || |
Sbjct 36233 ATGTGTTGTGGTCTCTCCACAACCTTTCCTTGGATTTTCAACAAGTAAGACCTCTCAAGG 36174
Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
||||| |||||||| |||| || |||||| || || || |||||
Sbjct 36173 GTTTTGAAACCAAAGTAGTCATAATCAAAGTCCCGGTCATAGATAAT 36127
>seq524
Length=308948
Score = 93.3 bits (102), Expect = 6e-14
Identities = 184/270 (68%), Gaps = 2/270 (1%)
Strand=Plus/Plus
Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087
|| || | ||| || ||||| || || | || ||| ||| || || |||||||||||
Sbjct 106120 AGACCTCTCTTCTTGAGCCAGAAGATAGCACAAAAACTTCCC-GAGAAAAAGATTCCTTC 106178
Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTG 50147
|| ||||| ||||||| ||||| || || | | ||| |||||| |
Sbjct 106179 CACACACGCAAAAGCAACAATCCTCTCAGCAAAAGACTCCCCACCATTGATCCACCTCAT 106238
Query 50148 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 50207
||||| | ||||||||| | ||||| || ||||| || | |||| || || ||
Sbjct 106239 TGCCCATTTGGCCTTCTTCTCAACACAGGGGATCGTCTCCACCGCATGGAACAGCCTGTG 106298
Query 50208 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 50267
||||| | ||||| | ||||| |||| ||| | ||||||||| || || || ||
Sbjct 106299 CTTTTCTGCAGAGTCTTTTATGTAAGTCTCGAGCAATAAACTATACATCTCAGAGTGTAT 106358
Query 50268 GTTTTCAATGGCCATCTGAAATCCGTAGAA 50297
|| ||||| || ||||| || || |||||
Sbjct 106359 ATTCTCAATAGCAATCTGGAACCCATAGAA 106388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718190185479840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |