Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq928 125 1e-23 seq694 113 6e-20 seq1254 107 3e-18 seq524 93.3 6e-14 >seq928 Length=80382 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||||||||| ||||| || || || ||||||||| | | ||||| | || Sbjct 51708 GTTCCAGCATTAAATAAAGTAGGCGATGCATGAGTAAACCATCTCTGAGACATAAAATGA 51767 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || |||||||| || ||||| || |||||||| || | || | ||||||| Sbjct 51768 TAGGTTCGTATAGCTGAATCAATATCATTTTTGTGAATTCCAACAGATACTCTCATTAAC 51827 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||| || || |||||||| | || |||| ||||| ||| || || |||| | Sbjct 51828 ATGTGTTGTGGCCTTTCAACAACTTTCCCTTTTACTTTCAGCAAATAGGACCTTTCGAGG 51887 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||||||||||| || | || |||||| || || || || || Sbjct 51888 GTTTTAAAACCAAAGTAATCATAATCAAAGTCACGATCATATATTAT 51934 >seq694 Length=127158 Score = 113 bits (124), Expect = 6e-20 Identities = 248/367 (68%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| ||||| || || || | ||| || || |||||||||||||| | ||| ||| Sbjct 32678 TTTCTGGTACTCCCCAACTCTTTTCTCAAAGAAATTAGTTTTTCCCTGCAAACTGATAAG 32619 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| ||||||||||||| ||||| || ||||||| | | ||||| | | Sbjct 32618 CTCCATCCAATCAAACGGATTTTGCACATTGTACATTTTTTCATACCCCAAAGCCTGCAA 32559 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 | |||||| || ||||| || || || |||||| |||| ||||||||| | ||| Sbjct 32558 AAGTCTATCGGCCACAAACTCGATGTAAACGCTCATCAGATCACCATTCATTCCCACAAG 32499 Query 49848 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 | || | || |||| || ||||||| | ||||| |||||||| | | | Sbjct 32498 GGCACAAGGTAATGCATCGCA--AACAAATTCTCGCTCAATCACGACCGCATCAGACACA 32441 Query 49906 ATAGATCTAACGGTTTCTTCACTCGG--TG-GATGCAATAAATGTTTAAACATCAAACAT 49962 || ||| || | || ||||| | || | || || | | | | |||||| Sbjct 32440 ATCTCTCTCACCCTCTCCTCACTAAGCTTGTTTTTCAGCAACTCGT---AGAGCAAACAA 32384 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 || ||||| ||||| || |||||||||| | ||| | || || || |||||||| || Sbjct 32383 GCAAAATCACAGTGAAGGCCCTCGTCTCGAGAAATCAACTCATTTGAGAACGTGAGACCT 32324 Query 50023 GGCATTA 50029 ||||||| Sbjct 32323 GGCATTA 32317 >seq1254 Length=70693 Score = 107 bits (118), Expect = 3e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | || | ||| |||| ||| |||| | |||||| ||||| |||||| Sbjct 37259 CCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACACGCAACATGGGAATTATACCA 37200 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||||| ||||| || || ||||| || || | || || ||||| || ||| Sbjct 37199 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCCCGGATATTGTGAACWGAT 37140 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| |||||||| || || ||| | ||| ||| ||| || |||||||| || Sbjct 37139 ACACCAATTCCCCCAGCAGACTTGCTGATGACTGCACATTCTTTCAAGGTATCATAAATT 37080 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || || ||||||||||| |||| | || |||||||| Sbjct 37079 CCTTCAATGCTATCATCTTTCATACACACCAGGAAACAGCT 37039 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | || || || ||||| || ||||| | | |||| |||| | Sbjct 36353 GTCCCAGCATTGAAGAGAGTCGGTGATGCGTGAGTGAACCACCTCTGGGACATGAGATGG 36294 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 ||||| | | | || || |||||| || ||| || || || || || | ||| ||| Sbjct 36293 TACGTTTTTAAGACAGAATCAATATCCTCTTTATGTATCCCAACAGCAACTCTCATCAAC 36234 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||| || ||||| || || | ||| | ||||||||||||||||| | || | Sbjct 36233 ATGTGTTGTGGTCTCTCCACAACCTTTCCTTGGATTTTCAACAAGTAAGACCTCTCAAGG 36174 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| |||||||| |||| || |||||| || || || ||||| Sbjct 36173 GTTTTGAAACCAAAGTAGTCATAATCAAAGTCCCGGTCATAGATAAT 36127 >seq524 Length=308948 Score = 93.3 bits (102), Expect = 6e-14 Identities = 184/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087 || || | ||| || ||||| || || | || ||| ||| || || ||||||||||| Sbjct 106120 AGACCTCTCTTCTTGAGCCAGAAGATAGCACAAAAACTTCCC-GAGAAAAAGATTCCTTC 106178 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTG 50147 || ||||| ||||||| ||||| || || | | ||| |||||| | Sbjct 106179 CACACACGCAAAAGCAACAATCCTCTCAGCAAAAGACTCCCCACCATTGATCCACCTCAT 106238 Query 50148 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 50207 ||||| | ||||||||| | ||||| || ||||| || | |||| || || || Sbjct 106239 TGCCCATTTGGCCTTCTTCTCAACACAGGGGATCGTCTCCACCGCATGGAACAGCCTGTG 106298 Query 50208 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 50267 ||||| | ||||| | ||||| |||| ||| | ||||||||| || || || || Sbjct 106299 CTTTTCTGCAGAGTCTTTTATGTAAGTCTCGAGCAATAAACTATACATCTCAGAGTGTAT 106358 Query 50268 GTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 || ||||| || ||||| || || ||||| Sbjct 106359 ATTCTCAATAGCAATCTGGAACCCATAGAA 106388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718190185479840