Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq928 122 1e-22 seq1254 98.7 1e-15 seq524 98.7 1e-15 >seq928 Length=80382 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| ||||||||||| ||||| || || || ||||||||| | | ||||| | || Sbjct 51708 GTTCCAGCATTAAATAAAGTAGGCGATGCATGAGTAAACCATCTCTGAGACATAAAATGA 51767 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || |||||||| || ||||| || || ||||| || | || | ||||||| Sbjct 51768 TAGGTTCGTATAGCTGAATCAATATCATTTTTGTGAATTCCAACAGATACTCTCATTAAC 51827 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || || || || |||||||| | || |||| ||||| ||| ||||| |||| | Sbjct 51828 ATGTGTTGTGGCCTTTCAACAACTTTCCCTTTTACTTTCAGCAAATAGGACCTTTCGAGG 51887 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||||||||||| || | || |||||| || || || || || Sbjct 51888 GTTTTAAAACCAAAGTAATCATAATCAAAGTCACGATCATATATTAT 51934 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | ||| |||| |||| | |||| || |||||||| ||| ||| Sbjct 50765 CCCCCTTGATCGACATAACGAGCTGTGTCATTAAATACTCGCAGCATTGGAACAATGCCA 50824 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| ||||| || || |||||||| || | ||||| ||||| || ||| Sbjct 50825 TTTGATGTCCCATTTGTTCCACGAATATAGCTGCCCGTAGCACGTATATTATGAACAGAT 50884 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||||||||| || || || || | || || ||| || |||||| || Sbjct 50885 ACACCTATTCCACCAGCTGACTTGCTTATAACAGCACACTCTTTCAAACAATCATAAATT 50944 Query 72358 CCCTCTATACTATCATCCATCATG 72381 || || |||||||||||| ||||| Sbjct 50945 CCTTCAATACTATCATCCTTCATG 50968 >seq1254 Length=70693 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | || || || ||||| || ||||| | | |||| |||| | Sbjct 36353 GTCCCAGCATTGAAGAGAGTCGGTGATGCGTGAGTGAACCACCTCTGGGACATGAGATGG 36294 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 ||||| | | | || || |||||| || |||||| || || || || | ||| ||| Sbjct 36293 TACGTTTTTAAGACAGAATCAATATCCTCTTTATGTATCCCAACAGCAACTCTCATCAAC 36234 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || || || ||||| || || | ||| | |||||||||||||| || | || | Sbjct 36233 ATGTGTTGTGGTCTCTCCACAACCTTTCCTTGGATTTTCAACAAGTAAGACCTCTCAAGG 36174 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| |||||||| |||| || |||||| || || || ||||| Sbjct 36173 GTTTTGAAACCAAAGTAGTCATAATCAAAGTCCCGGTCATAGATAAT 36127 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 71164 ACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATT 71223 ||||| ||| | || ||||| || || || || | ||||||||||||| | |||| Sbjct 39748 ACTCTTCGACTATATATATTGGAAGTGTAAGGCTCGAAGCACTCATTATTTCCAAGAATT 39689 Query 71224 TGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGAT 71283 || |||||| ||||| ||||||||||| || | ||| |||||| | |||| | || Sbjct 39688 TGGCTAGTTGAAGCAGTGGGCATAGGTGCTACAAGAAGAGAATTTCTTACTCCAT-TAAT 39630 Query 71284 CG-GATTTTATCTTTTAGAGATTCCCAATTCCA 71315 | |||||||| | |||| |||||| ||||| Sbjct 39629 AGCTATTTTATCCCTGAGAGCTTCCCAGTTCCA 39597 >seq524 Length=308948 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCT 42193 || || | ||| || ||||| || |||| ||| ||| || || ||||||||||| Sbjct 106120 AGACCTCTCTTCTTGAGCCAGAAGATAGCACAAAAACTTCCCGAGAAAAAGATTCCTTCC 106179 Query 42194 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGA 42253 || |||||| |||| || ||||| || || | | ||| |||||| | Sbjct 106180 ACACACGCAAAAGCAACAATCCTCTCAGCAAAAGACTCCCCACCATTGATCCACCTCATT 106239 Query 42254 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 42313 ||||| | ||||||||| | ||||| || ||||| || | |||| || || || Sbjct 106240 GCCCATTTGGCCTTCTTCTCAACACAGGGGATCGTCTCCACCGCATGGAACAGCCTGTGC 106299 Query 42314 ttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATG 42373 ||||| | ||||| | || || |||| ||| | ||||||||| || || || || Sbjct 106300 TTTTCTGCAGAGTCTTTTATGTAAGTCTCGAGCAATAAACTATACATCTCAGAGTGTATA 106359 Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 || ||||| || ||||| || || ||||| || ||| || | ||||| || || || Sbjct 106360 TTCTCAATAGCAATCTGGAACCCATAGAAGGCTCGGGCTTCAGCCACCTGGACCTCAGT 106418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671065743814560