Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq187 100 2e-16 seq1646 93.3 3e-14 >seq187 Length=363338 Score = 100 bits (110), Expect = 2e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||| || | || || || ||||| || || || || ||||||||||| | Sbjct 22224 CCACCCCTCAACCTGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT 22283 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | |||| || | ||||| || ||| | || | | || ||||| ||| Sbjct 22284 AGGGTACGYCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCTGGGGGA 22343 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| ||| ||| ||| | || ||||| || | |||| || Sbjct 22344 ATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCAGAACTTTCAACC 22403 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || ||||| || ||||| |||||||| Sbjct 22404 TCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 22450 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||| || | || || || ||||| || || || || |||||||| || Sbjct 29890 CCACCCCTCAACCTGAGCACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGCA 29949 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | |||| || | ||| ||||| ||| | || | | ||| ||||| || Sbjct 29950 AGGGTACGTCCGTCCTCAAGTTGCTTGCCGGCGAAGATGAGCCTTTGCTGGTCTGGGGGG 30009 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| ||| |||||| | || ||||| ||| | | || || Sbjct 30010 ATCCCTTCTTTGTCCTGAATCTTGGCCTTTACGTTATCAATGGTGTCGGAACTCTCAACC 30069 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || ||||| || ||||| || ||||| Sbjct 30070 TCGAGGGTGATGGTCTTGCCCGTAAGAGTCTTGACAAAGATCTGCAT 30116 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||||||| | || || || || ||||| || || || || || ||||| ||| Sbjct 30116 TGCCACCTCTCAAACGTAGGACCAAGTGTAGGGTAGACTCCTTCTGGATATTGTAGTCGG 30175 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | |||| || | ||||| |||||| | || | | || ||||| | Sbjct 30176 CAAGGGTACGACCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGCCTCTGCTGGTCTGGGG 30235 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||| || ||||| |||||| ||| ||| | || ||||| || |||| | Sbjct 30236 GAATTCCCTCCTTGTCTTGAATTTTCGCCTTGACATTGTCGATGGTGTCAGAGCTTTCGA 30295 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | ||| ||||| ||||| || || || || ||||| || |||||| Sbjct 30296 CTTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCATA 30345 >seq1646 Length=84127 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || ||||| || ||||| || ||| | | ||||||| | ||| Sbjct 61895 TGGAGGGTGGACTCCTTTTGGATATTGTAGTCAGCTAGGGTGCGGCCGTCTTCGAGCTGT 61954 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | || | | || ||||| ||| || || |||||||| ||||| Sbjct 61955 TTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATTTTC 62014 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || |||| || || ||||||||||| || || || Sbjct 62015 GCCTTGACATTGTCAATGGTGTCAGAGCTTTCAACTTCCAAGGTAATGGTCTTTCCGGTG 62074 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 ||||| |||||||| ||||||||| Sbjct 62075 AGAGTCTTTACAAAGATTTGCATA 62098 Score = 82.4 bits (90), Expect = 6e-11 Identities = 164/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | || || || || |||||| || || || || ||||| ||| | Sbjct 62099 CCACCTCTCAAACGTAGGACCAAGTGTAGGGTGCTCTCCTTCTGGATATTGTAGTCGGCT 62158 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | |||||||| || || || || | || | | || ||||| ||| Sbjct 62159 AGGGTACGACCATCTTCTAACTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 62218 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || |||||| ||| || | || ||||||||| |||| || Sbjct 62219 ATACCCTCTTTATCCTGAATTTTAGCCTTGACGTTGTCGATGGTATCGGAGCTTTCGACC 62278 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA--TATTTGAAAATA 15374 || | || ||||| || || || ||||| || ||||| || |||| | ||| || ||| Sbjct 62279 TCGAGAGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATCTGTTTCAAGATA 62338 Query 15375 AA 15376 || Sbjct 62339 AA 62340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362140550499396