Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq187 98.7 8e-16 seq1083 89.7 4e-13 seq1646 86.0 5e-12 seq139 86.0 5e-12 >seq187 Length=363338 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| ||| |||||| || || |||||||| || | || | |||||||| Sbjct 22014 ACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCAGCTAGGGTGCGGCCGTCCTCC 22073 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||||||||| || | || || |||||||||||| ||| | ||||| ||||| | Sbjct 22074 AGCTGTTTACCGGCGAAGATGAGCCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCTTGA 22133 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | | | | || ||| ||| || | ||| ||||| || Sbjct 22134 ATTTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTCTTG 22193 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || |||||||| |||||||| Sbjct 22194 CCGGTCAACGTCTTGACAAAGATTTGCAT 22222 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| ||||||||||| || || ||||| || || | || ||||||| Sbjct 41619 ACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGTCCGTCCTCA 41678 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||||||||| ||| | || || ||||| ||||| ||| | ||||| || || | Sbjct 41679 AGCTGTTTACCGGCAAAGATGAGCCTCTGTTGATCTGGGGGAATTCCCTCCTTATCTTGA 41738 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 |||||| || || | | ||| || ||| |||| || | ||| ||||| || Sbjct 41739 ATTTTCGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTG 41798 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || || ||||||||||| Sbjct 41799 CCGGTGAGGGTCTTCACGAAAATTTGCAT 41827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | || |||| ||| | ||||||||||| || |||||||| || || Sbjct 30118 CCACCTCTCAAACGTAGGACCAAGTGTAGGGTAGACTCCTTCTGGATATTGTAGTCGGCA 30177 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || ||||||| |||||||| || || | || || |||||||| || ||| Sbjct 30178 AGGGTACGACCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGA 30237 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-T 18993 | ||||| ||||| ||||||| || || | | ||| || || || | || Sbjct 30238 ATTCCCTCCTTGTCTTGAATTTTCGCCTTGACATTGTCGATGGTGTC-AGAGCTTTCGAC 30296 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| ||||| ||||| || | || || ||||| || ||||| Sbjct 30297 TTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCAT 30344 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | || |||| ||| || ||| ||||| || |||||||| || || Sbjct 22452 CCACCTCTCAAACGTAGGACCAAGTGTAAGGTACTTTCCTTCTGGATATTGTAGTCAGCT 22511 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || ||||||| |||||||| || ||| | || || |||||||||||| ||| Sbjct 22512 AGCGTACGACCGTCCTCGAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGGGGA 22571 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||| || ||| || | | | | || ||| |||| Sbjct 22572 ATCCCTTCCTTGTCCTGAATCTTGGCTTTAACATTGTCTATGGTGTCGGAGCTCTCCACC 22631 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| ||||| || || || | || |||||||| || |||||| Sbjct 22632 TCCAAGGTGATGGTCTTTCCAGTAAGCGTCTTGACAAATATCTGCATT 22679 >seq1083 Length=90715 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| || || ||||| || || | || | ||||| || ||||| || Sbjct 36379 GTAGACTCCTTCTGTATGTTGTAGTCGGCTAAAGTGCGACCATCCTCGAGTTGTTTTCCA 36438 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || ||||| |||||||| || | || ||||||||| |||||| ||| Sbjct 36439 GCAAAGATGAGTCTTTGCTGATCTGGCGGGATGCACTCTTTGTCCTGTATTTTCGATTTC 36498 Query 18965 ACCTGGCCGACAGTATCGCCAGGC-TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | ||| || ||| || | ||| |||| ||| |||||||| || |||| || Sbjct 36499 ACGTTGTCGATTGTGTCG-GAGCCTTCCACCTCGAGGGTGATGGTTTTTCCGGTTAGGGT 36557 Query 19024 TTTGACAAAAATTTGCAT 19041 ||| ||||| || ||||| Sbjct 36558 TTTCACAAAGATCTGCAT 36575 >seq1646 Length=84127 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||||||||| |||||||| || || | || | |||| || Sbjct 61889 ACCAGGTGGAGGGTGGACTCCTTTTGGATATTGTAGTCAGCTAGGGTGCGGCCGTCTTCG 61948 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||||||||| ||| | || || |||||||| || || | ||||||||||| Sbjct 61949 AGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGG 62008 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGTT 19009 |||||| || || | | | | || | ||| || || ||| | ||||||||| Sbjct 62009 ATTTTCGCCTTGACATTGTCAATGGT---GTCAGAGCTTTCAACTTCCAAGGTAATGGTC 62065 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || | ||| || ||||| |||||||| Sbjct 62066 TTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 62097 >seq139 Length=432677 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || || ||||| ||||| ||||| || || | ||| | | ||||| Sbjct 178577 CACCAGATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCAGCTAGGGTTCGGCCATCCTC 178636 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || ||||||||||| || | |||||||||||| Sbjct 178637 GAGCTGCTTTCCAGCAAAGATTAGCCTCTGCTGATCTGTCGGGATGCCCTCTTTGTCTTG 178696 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| ||| || |||||||||| | ||| |||| ||| || || || Sbjct 178697 TATTTTGGATTTGACACTTTCGACAGTATCAGGACTTTCCACATCGAGGGTTATAGTCTT 178756 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||||||||||| || ||||| Sbjct 178757 TCCGGTAAGGGTTTTGACAAATATCTGCAT 178786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414528559381864