Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1646 105 5e-18 seq187 86.0 4e-12 seq1470 82.4 5e-11 >seq1646 Length=84127 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| | || ||||| ||||| |||||||| || || ||||| || ||| Sbjct 62098 ACCACCTCTCAAACGTAGGACCAAGTGTAGGGTGCTCTCCTTCTGGATATTGTAGTCGGC 62157 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| || || || ||||| ||||| || | || |||||||| | || Sbjct 62158 TAGGGTACGACCATCTTCTAACTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGG 62217 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| |||||||| |||||| ||||| | | | ||||| | || || Sbjct 62218 AATACCCTCTTTATCCTGAATTTTAGCCTTGACGTTGTCGATGGTATCGGAGCTTTCGAC 62277 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || || || ||||| | |||||||||||| || ||||| Sbjct 62278 CTCGAGAGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 62325 >seq187 Length=363338 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || |||||||||||| || | | |||| ||||| || || || ||||| Sbjct 21575 CTCTTTCTGGATATTATAATCGGCCAAAGTCCTCCCATCTTCCAACTGCTTGCCGGCAAA 21634 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| ||||||||| | || | ||| || ||||| |||||| || || | Sbjct 21635 GATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGAATTTTCGCCTTCACGTT 21694 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | | ||||| | |||||| || | || || || || ||||| | ||||| || Sbjct 21695 ATCGATCGTATCAGAGCTCTCCACCTCCAAGGTGATAGTCTTCCCGGTAAGGGTCTTGAC 21754 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 21755 AAAAATCTGCAT 21766 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || || || ||||| ||||| || ||| || ||| | || || Sbjct 30364 ACCAGATGAAGGGTACTTTCCTTTTGGATATTGTAGTCGGCCAAGGTACGACCGTCCTCT 30423 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||||| || ||||| | || ||||||||| |||||| || |||||||| Sbjct 30424 AGCTGTTTTCCAGCGAATATAAGCCTTTGCTGGTCTGGAGGTATGCCCTCTTTATCCTGG 30483 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 |||||| ||||| | | | || || | ||| || |||| || || || || Sbjct 30484 ATTTTTGCCTTGACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTG 30543 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||||||||||| || ||||| Sbjct 30544 CCGGTGAGTGTCTTCACAAAGATCTGCAT 30572 >seq1470 Length=49555 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| | || ||||| || | || ||||| || || || || || ||| Sbjct 30843 ACCACCTCTCAAACGTAGGACCAAGTGCAAGGTACTCTCCTTCTGGATGTTGTAGTCGGC 30784 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || | |||||||| ||||| || | || |||||||| |||| Sbjct 30783 AAGGGTACGACCATCCTCAAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGG 30724 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || || |||||| |||||| || || || ||| || || | ||| || Sbjct 30723 GATTCCCTCCTTATCTTGGATTTTTGCCTTAACGTTATCAATGGTGTCGGAGCTCTCGAC 30664 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || || || ||||| | ||||||||||| || ||||| Sbjct 30663 CTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCAT 30616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354739740351888