Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1083 84.2 2e-11 >seq1083 Length=90715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| | | ||| | |||||| ||||| || || ||||||||||| ||| | Sbjct 36349 CCGCCTCTTAAACGGAGCACGAGATGTAGAGTAGACTCCTTCTGTATGTTGTAGTCGGCT 36408 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGG 20100 | ||| | ||| || | |||||| || ||| | || || || || ||||| | |||| Sbjct 36409 AAAGTGCGACCATCCTCGAGTTGTTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGCGGG 36468 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | || |||||||| ||||| |||||| | | | | | ||| |||| Sbjct 36469 -ATGCACTCTTTGTCCTGTATTTTCGATTTCACGTTGTCGATTGTGTCGGAGCCTTCCAC 36527 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| |||||||| ||||| | ||||| ||||| || ||||| Sbjct 36528 CTCGAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACAAAGATCTGCAT 36575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419542424276436