Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq139 95.1 1e-14 seq187 89.7 4e-13 seq1646 82.4 6e-11 >seq139 Length=432677 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||||| | ||| | ||||| || |||||||||||||||||||||| Sbjct 178331 ACCGCCCCTCAACCGGAGCACAAGGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCAG- 178389 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 ||| || || ||||||| |||||||| ||| | | || | | ||||||||| || Sbjct 178390 CAAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGATCTGGCG 178449 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || |||||||| ||| || ||||| | | |||||||| | ||| Sbjct 178450 GAATACCCTCCTTGTCTTGAATCTTTGTCTTGACATTATCGATGGTATCCGAGCTCTCAA 178509 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || || ||||| ||||||||||| || ||||| Sbjct 178510 CCTCTAGAGTAATAGTCTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 178558 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| ||||||||||| |||||| || ||| ||||||| | | Sbjct 177876 CCTCCCCTCAAACGGAGCACCAAATGAAGTGTCGACTCCTTCTGTATGCTGTAATCTG-C 177934 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| || ||||||| |||||||| ||| || |||| | | ||||||||| || Sbjct 177935 AAGTGTACGACCGTCCTCTAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGAGG 177994 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || || || ||| || || ||| | | | || ||||| | | ||| Sbjct 177995 AATACCCTCTTTATCCTGGATCTTTGCCTTAACATTATCGATTGTATCAGAACTCTCGAC 178054 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || || || | || || ||||||||||||||| Sbjct 178055 CTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTAACAAAAATCTGCATC 178103 >seq187 Length=363338 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || || || |||||||| || |||||||||||||| | || |||||||| Sbjct 22014 ACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCAGCTAGGGTGCGGCCGTCCTCC 22073 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| |||||| || | || | | |||||||||| || | | |||||||| | Sbjct 22074 AGCTGTTTACCGGCGAAGATGAGCCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCTTGA 22133 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| ||||||| |||| ||| ||| | || ||||| || Sbjct 22134 ATTTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTCTTG 22193 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | || || ||||| || ||||| Sbjct 22194 CCGGTCAACGTCTTGACAAAGATTTGCAT 22222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | |||||| | ||| || || || || |||||| || |||||||||||||| Sbjct 22223 ACCACCCCTCAACCTGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGC 22282 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| ||||| |||||| || | || | | |||||| || || Sbjct 22283 TAGGGTACGYCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCTGGGGG 22342 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| ||| || ||||| | | ||||| || | | || Sbjct 22343 AATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCAGAACTTTCAAC 22402 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || ||||| || ||||| || ||||| Sbjct 22403 CTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 22450 >seq1646 Length=84127 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| | || || || || || ||||||||||| || || ||||| || || Sbjct 62098 ACCACCTCTCAAACGTAGGACCAAGTGTAGGGTGCTCTCCTTCTGGATATTGTAGTCGGC 62157 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || | || || | |||||| ||| | | || | | |||||| || || Sbjct 62158 TAGGGTACGACCATCTTCTAACTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGG 62217 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || || || ||| |||||| ||||| | | || |||||||||| || | | Sbjct 62218 AATACCCTCTTTATCCTGAATTTTAGCCTTGACGTTGTCG--ATGGTATCGG-AGCTTTC 62274 Query 48677 G-TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | ||||| || ||||| || ||||||||||| |||||||| ||||||||| Sbjct 62275 GACCTCGAGAGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATC 62326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421206246704756