Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1327 111 8e-20 seq956 111 8e-20 seq72 111 8e-20 seq2990 105 3e-18 seq366 105 3e-18 seq77 105 3e-18 seq103 104 1e-17 seq38 104 1e-17 seq848 102 4e-17 seq5813 100 1e-16 seq4971 100 1e-16 seq482 100 1e-16 seq275 100 1e-16 seq1295 95.1 6e-15 seq3 84.2 1e-11 >seq1327 Length=70993 Score = 111 bits (122), Expect = 8e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 61836 AAAAATAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 61777 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 61776 CTCTAACCAGCTGAGCTAATAGGCC 61752 >seq956 Length=164127 Score = 111 bits (122), Expect = 8e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 34217 AAAAATAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 34276 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 34277 CTCTAACCAGCTGAGCTAATAGGCC 34301 >seq72 Length=448732 Score = 111 bits (122), Expect = 8e-20 Identities = 87/102 (85%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 11429 AAATATA-GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||||| | || ||| ||||| |||| |||||||| | | |||||||| |||||||| Sbjct 119619 AAATATAAGTATAAATTAAAAAATAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTC 119677 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||| |||||||||| |||| Sbjct 119678 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 119719 >seq2990 Length=14269 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1626 AAAAAA--AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1569 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 1568 GCTCTAACCAGCTGAGCTAATAGGCC 1543 >seq366 Length=177453 Score = 105 bits (116), Expect = 3e-18 Identities = 83/100 (83%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 || ||| |||||| |||| | | ||||||||| | | |||||||| |||||||||| Sbjct 164797 AAAATAAAATTAA-AAAAWTTAGTAATGGCCCATGMAGGTCTCGAACCTGCGACCTTCGC 164855 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| |||| |||||||||| |||| Sbjct 164856 GTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 164895 >seq77 Length=295240 Score = 105 bits (116), Expect = 3e-18 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 || |||| ||||||||| | | |||||||| |||||||||||||||||||||||||||| Sbjct 294095 AAACAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTC 294154 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | |||| |||||||||| |||| Sbjct 294155 TAACCAGCTGAGCTAATAGGCC 294176 >seq103 Length=294124 Score = 104 bits (114), Expect = 1e-17 Identities = 80/96 (83%), Gaps = 6/96 (6%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||| || |||||||| |||||||| | | |||||||| |||||||||||||| Sbjct 256391 TAGAAATATTAAAAAAT------GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 256444 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| |||||||||| |||| Sbjct 256445 TTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 256480 >seq38 Length=537467 Score = 104 bits (114), Expect = 1e-17 Identities = 80/95 (84%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||| || || ||||||||| | | |||||||| |||||||||||||||||| Sbjct 116076 ATTAATAATAAG---AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 116132 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||||||||| |||| |||||||||| |||| || Sbjct 116133 CACGACGCTCTAACCAGCTGAGCTAATAGGCCTTC 116167 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 179914 AAAATAAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 179857 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 179856 TCTAACCAGCTGAGCTAATAGGCC 179833 >seq848 Length=115280 Score = 102 bits (112), Expect = 4e-17 Identities = 86/103 (83%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 11428 GAAAT-ATAGAATTAAT--AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||||| | |||||||| ||||||| || ||||||||| | ||||||||| ||||| Sbjct 59506 GAAATCACAGAATTAAAGCAAAAAATAAA--TGGCCCATGCAGATATCGAACCTGCGACC 59449 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 ||||| |||||||||||||||||| |||| |||||||||| || Sbjct 59448 TTCGCATTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGG 59406 >seq5813 Length=1216 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 360 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 301 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 300 TGAGCTAATAGGCC 287 >seq4971 Length=1216 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 360 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 301 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 300 TGAGCTAATAGGCC 287 >seq482 Length=150960 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 149818 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 149877 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 149878 TGAGCTAATAGGCC 149891 >seq275 Length=310906 Score = 100 bits (110), Expect = 1e-16 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| ||| ||||| ||| | | |||||||| |||||||||| |||||||||||| Sbjct 138698 TAAAAAA--AAAATGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCRTTATTAGCACGA 138641 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 138640 CGCTCTAACCAGCTGAGCTAATAGGCC 138614 >seq1295 Length=107135 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||| ||||||| |||| | Sbjct 4385 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAACCAGC 4444 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 4445 TGAGCTAATAGGCC 4458 >seq3 Length=192718 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/74 (85%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 11458 GCCCATGAAAGGATC--GAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | || || ||||| ||||||||||| ||||||||||||||||| |||| | Sbjct 160681 GCCCATGCAGGGGTCTCGAACCAACGACCTTCGCGGTATTAGCACGACGCTCTAACCAGC 160622 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 160621 TGAGCTAATAGGCC 160608 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261463295293456