Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19 149 1e-31 seq1014 141 1e-29 seq690 138 2e-28 seq183 123 4e-24 seq23 82.4 1e-11 >seq19 Length=1442108 Score = 149 bits (164), Expect = 1e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | ||||| || |||||||| |||||||| ||||| ||||| Sbjct 572601 GCAAAACGTCATCGTAAGGTGCTTCGTGACAACATCCAGGGAATCACTAAGCCCGCTATT 572542 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | | || ||| | || || ||||||||| |||| ||| | ||||||| |||| | Sbjct 572541 CGGAGGTTAGCACGTAGGGGCGGTGTCAAGCGTATCTCAGGACTCATCTATGAGGAGACT 572482 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | |||||||| | ||| ||||||| |||||| | ||| |||||| Sbjct 572481 CGTGGCGTCCTCAAGATCTTTTTGGAGAATGTTATCCGTGATGCCGTTACCTACACCGAG 572422 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||||||| | |||||||| || |||||||| | |||||||| ||||| Sbjct 572421 CACGCTAGGAGGAAGACTGTTACTGCCATGGATGTTGTCTATGCTTTGAA 572372 >seq1014 Length=99565 Score = 141 bits (156), Expect = 1e-29 Identities = 179/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||||||||| |||||||| | || || || | ||| Sbjct 45672 CTTCGTGACAACATCCAGGGCATCACCAAGCCTGCTATCCGCAGGCTAGCACGCAGGGGT 45731 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||||||| |||| || | ||||||| |||| |||| ||| | ||||||||| Sbjct 45732 GGAGTCAAGCGTATCTCAGGGCTCATCTATGAGGAGACACGTGGTGTCCTCAAGATCTTC 45791 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||||| | |||||| | || || ||||| |||| | ||||||||| Sbjct 45792 TTGGAGAATGTTATTCGTGATGCGGTGACGTACACTGAGCATGCTAGGAGGAAGACTGTC 45851 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||||| ||||| | ||||| | | | ||||| || || Sbjct 45852 ACTGCGATGGATGTTGTGTATGCGTTGAAGAGGCAAGGGAGGACCTTGTATGGGTTCGGG 45911 Query 16694 AGTTAA 16699 ||||| Sbjct 45912 GGTTAA 45917 >seq690 Length=137789 Score = 138 bits (152), Expect = 2e-28 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | || || || |||||||| || || ||||| || |||||| Sbjct 128012 GCTAAACGTCATCGTAAGGTGCTGCGTGACAACATCCAGGGCATAACCAAACCTGCTATC 128071 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | || || ||| | ||||| ||||| || |||| || | ||||||| |||| Sbjct 128072 AGAAGGCTTGCACGTAGGGGTGGTGTCAAACGCATCTCGGGGCTCATCTATGAGGAGACA 128131 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||||||||| | ||| ||||| | ||||||| | ||| || ||| Sbjct 128132 CGTGGTGTCCTCAAGATCTTCTTGGAGAATGTTATTCGTGATGCTGTGACCTACACTGAG 128191 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | ||||||||||| | |||||| | || ||||| ||||| | || || Sbjct 128192 CATGCTAGGAGGAAGACTGTCACTGCTATGGATGTGGTGTATGCCTTGAAGAGGCAGGGG 128251 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | |||||||||||| |||| Sbjct 128252 AGGACTTTGTATGGTTTTGGAGGTTA 128277 >seq183 Length=349627 Score = 123 bits (136), Expect = 4e-24 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || ||||| || | | || || || || |||||||| || ||||||||||| || || Sbjct 259625 GCGAAACGTCACCGTAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCTGCCAT 259567 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | || |||||| | |||||||| |||||| ||||||| | |||| || |||| Sbjct 259566 CCGCAGGCTCGCTCGTAGGGGTGGAGTTAAGCGTATCTCTGGGCTCATCTACGAGGAGAC 259507 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||||||||| | ||| ||| ||| |||| | | ||||| || Sbjct 259506 ACGTGGCGTCCTCAAGATCTTCTTGGAGAACGTCATCAGAGATGTTGTTACGTATACTGA 259447 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||| |||| | |||||||| ||| | |||||| | || ||||| Sbjct 259446 GCATGCTAGGAGGAAGACTGTTACCGCTATGGATGTGGTRTATGC 259402 >seq23 Length=1298285 Score = 82.4 bits (90), Expect = 1e-11 Identities = 154/225 (68%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || || || || ||||| || || || || ||||| ||||| Sbjct 499448 GCAAAGCGTCACCGTAAGGTC-CTCCGTGACAACATTCAGGGCATAACTAAGCCCGCTAT 499506 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | |||||| | ||||| || ||||| | || ||| | || || |||| Sbjct 499507 CCGTCGCTTAGCTCGTAGGGGTGGTGTTAAGCGKATAAGCGGGTTGATTTACGAGGAGAC 499566 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||| || ||| | ||| ||||| || || | ||||| || Sbjct 499567 ACGTGGCGTGCTGAARATATTCTTGGAGAATGTTATTAGGGACGCGGTTACGTATACGGA 499626 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||| ||| | |||||||| || | |||||| | || ||||| Sbjct 499627 GCATGCTCGGAGGAAGACTGTTACGGCTATGGATGTTGTTTATGC 499671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067194327908