Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq194 248 1e-60 seq116 123 3e-23 seq60 114 2e-20 seq407 102 1e-16 seq471 95.1 2e-14 >seq194 Length=269275 Score = 248 bits (274), Expect = 1e-60 Identities = 252/327 (77%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 138338 CTTTGGTGTGGCA-GCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGA 138396 ||||||||| ||| || || || |||||| | | || |||| || || ||||| |||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 138397 CCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTG 138456 | | ||||| |||||||||||||| || || ||| | | || | ||| |||| |||| Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 138457 CTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTT 138516 |||||||||||||||| || ||||||||||| | ||||||||| || ||||||| | Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 138517 TTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTT 138576 | || ||| | || ||||||| |||||||| |||||||||||||| |||||||| | Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 138577 ACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGC 138636 ||||| ||||||||||| |||||||| |||||| |||||| | || ||||||||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 138637 TCTTTGTTCCCGTCATGGGTCTCTGGA 138663 | ||||| || || | ||| | |||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGGA 237242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 138144 GGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTT 138203 || || || ||||||||||| || |||||||| || ||| | || || || |||||| | Sbjct 238034 GGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATAGGTTTCATGTTA 237975 Query 138204 CGCCAGTTTGAGATCTCTCG-TCTGGTAGGCA--TCCGTCCCTACAACGCAATCGCATTC 138260 || || ||||| | |||| |||| | || | ||||| || || ||||| ||||| Sbjct 237974 CGTCAATTTGAACTTGCTCGATCTGTT---CAATTACGTCCTTATAATGCAATTACATTC 237918 Query 138261 TCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGT 138320 ||||| || || ||| | || || | ||| |||| ||||| | |||| || || Sbjct 237917 TCTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACTAAGTCAGTCGGGT 237858 Query 138321 TGGTTCTTTG 138330 ||||| |||| Sbjct 237857 TGGTTTTTTG 237848 >seq116 Length=395782 Score = 123 bits (136), Expect = 3e-23 Identities = 176/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 135527 GCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCT---TCTAGC 135583 ||||| |||||| | ||||||||||| || || || | || |||| | ||| || Sbjct 22679 GCTGGATCTCTACTTTACGGAAATAATATTATTTCCGATGTCATTATTTATAGTTCT-GC 22737 Query 135584 AACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTC--TC--TTGATGAGTG 135639 | || || || | ||||| || || || ||||||||| | || || ||||||| || Sbjct 22738 A--GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATG 22795 Query 135640 GCTATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTC 135699 | || | ||||||||||||| | ||||| | || | |||||| | | ||||| | Sbjct 22796 GTTACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 22855 Query 135700 TTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGT 135759 |||||||||||| ||||||||||| || ||| ||||||||| ||||||||| ||| Sbjct 22856 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGT 22915 Query 135760 CGC 135762 || Sbjct 22916 TGC 22918 >seq60 Length=520799 Score = 114 bits (126), Expect = 2e-20 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 138684 GGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAA 138743 || || |||| ||| |||| || ||||| ||||| | || ||||||||||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 138744 GATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCC 138803 ||||||||||| ||||| ||||||||||| || ||||| | || || ||| | ||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 138804 TGGA 138807 |||| Sbjct 267456 TGGA 267453 >seq407 Length=272206 Score = 102 bits (112), Expect = 1e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 138376 TTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTC 138435 |||| || || ||||| ||||| | || | |||||||||||||| || || ||| | Sbjct 61913 TTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATGATGGGAGTTGCCGGTGTAT 61972 Query 138436 TTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAG 138495 | || | ||| |||||||||||||| ||||||||| | ||||||||||| | ||||| Sbjct 61973 TAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTCGAAAATACTTTATTTGAAG 62032 Query 138496 ATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAG 138540 |||| || ||||||| || || ||| | || |||| || Sbjct 62033 ATGGTGATGGTACAAATACATTCCGTGCTTTTAACCCKACTCGAG 62077 >seq471 Length=100806 Score = 95.1 bits (104), Expect = 2e-14 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 138036 AATTTCCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTA 138095 ||||| | || || || ||||| | |||||| || | | | |||||| | | || Sbjct 70226 AATTTTTTAACGGCTGCAGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTA 70285 Query 138096 CTTTGGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGG 138155 || ||||||||| | | ||||||||| | || |||| ||| | || || || ||| Sbjct 70286 CTCTGGGGTCCTAAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGG 70345 Query 138156 ACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAG 138215 |||||||| || |||||||| || || | || || || |||||| | | || ||||| Sbjct 70346 ACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAA 70405 Query 138216 ATCTCTCG-TCTG-GTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCC 138268 | |||| |||| ||| | ||||| || || || || ||||||||||| || Sbjct 70406 CTTGCTCGATCTGTGTA--ATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627899268902400